Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1093 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTCGTTTCTCTCTCTCCAAAAACTCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCACTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGACATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTGGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATCATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAATTGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGCAATAGAAGGAGTTAACTCTATTTTTCTAATATGGAATCTTCAACACCTAGAACCAGGGTTTCTTGAATCTCCCGCACCTACCTGTGGTTCAATCATGAGTTGTGGTTGTGCAAATTGCACACCCTTGGCTCAAAAGGCCCTCTTCGACTACAGCATGGTCGGTCTTGGCCAAGGTGGGCCTATCGAGTCATCAACATTTTTGGGGCTTGAGCTTGATTTTTGTGGTTTTGAATCTCGGTTTTTCCAATTAGTGTTCAAGTGGTATTAG 1455 40.34 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQTFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNHDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIELAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQAIEGVNSIFLIWNLQHLEPGFLESPAPTCGSIMSCGCANCTPLAQKALFDYSMVGLGQGGPIESSTFLGLELDFCGFESRFFQLVFKWY 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25165946 25169767 + ClG42_04g0109300.10 Clacu04g1093 247490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1093 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 372 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu04g1093 484 FunFam protein indeterminate-domain 12-like 36 106 - -
Clacu04g1093 484 SMART c2h2final6 100 130 IPR013087 -
Clacu04g1093 484 SMART c2h2final6 136 163 IPR013087 -
Clacu04g1093 484 SMART c2h2final6 57 79 IPR013087 -
Clacu04g1093 484 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Clacu04g1093 484 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Clacu04g1093 484 Gene3D Classic Zinc Finger 35 100 - -
Clacu04g1093 484 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Clacu04g1093 484 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Clacu04g1093 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Clacu04g1093 484 Coils Coil 322 384 - -
Clacu04g1093 484 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Clacu04g1093 484 MobiDBLite consensus disorder prediction 23 43 - -
Clacu04g1093 484 MobiDBLite consensus disorder prediction 195 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1093 Clacu-Chr4:25165946 Clacu04g1340 Clacu-Chr4:27270805 1.30E-110 dispersed
Clacu04g1093 Clacu-Chr4:25165946 Clacu08g1684 Clacu-Chr8:26474575 2.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47534 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1093 K25871 - csv:101210748 711.064