Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1104 ATGCAAACCCAGATGGGAACTCGTTTCATTTCTTTCTTTCTTTTGGGATTCTGTTTTCTACTTCCCACTGTGAAACCAGATCTTGCTTCTGATAGAACAGCTCTTTTGGCCCTTCGTTCTGCTGTGGGTGGCCGAACTCTTATGCTTTGGAATGTGACTGATCAGAACCCCTGTTCTTGGCCTGGGATTCAATGCGAGGACAATCGTGTCACTGTTCTTCGTCTTCCCGGAGCGGCGCTTTTCGGTCAATTACCGAATGGGATTTTTGGGAACTTGACTCACCTTCGTACACTCAGCCTTCGGCTCAATGCCCTTTCCGGTCAGCTCCCCTCAGATCTCTCTGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGCCTTGTCCCTGATTTCTTGTTTCAGCTTCGTGACCTTGTTCGTCTTAATTTGGCTTCCAATAACTTTTCTGGGGAGATCTCTTTCGGGTTCAACAATTTGACCCGTCTCAAAACTCTGTTCCTTGAGAAAAATCATCTCTCTGGGTCTATCCCGGACTTGAAGATCCCTCTGGATCAGTTCAACGTTTCTAACAATCAGTTAAATGGGTCGGTACCTAAGGGATTGCAGTCGTTTTCTTCGAGTTCCTTTTTGGGGAATTCTCTCTGTGGGCGTCCTCTTGAGTCTTGCTCTGGTGATCTTGTTGTGCCGACAGGGGAGGTTGGGAGCAATGGCGGCTCTGGACACAAGAAAAAGTTGTCAGGGGGAGCCATTGCTGGGATTGTTATTGGATCTGTACTGGGTTTTGTGTTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAGAGTTCTAAGAAAACGAGTTCAGTCGATGTAGCCACAGTGAAGCATCCTGAAGTGGAAATTCATGGCGGTAAGCCAGCTGAGGAGATTGAAAATGGGGGTTACAGTAATGGTTATGCTGTGCCAGCCACTGCTGCTGCTGCTTCTGCTGCAACAGTGGCGGCCGGTACTGCAAAGGGGGAAGTGAATGCCAATGGTACGGGGACTAAAAAATTGGTGTTTTTTGGCAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCTGAAGTGTTGGGGAAAGGAACCTTTGGGACTGCTTACAAAGCAGTTTTGGAAGTGGGTTCTGTTGTGGCTGTGAAGAGGTTGAAGGATGTTACTATAACAGAGAGGGAATTCAGAGAGAAGATTGAAGCTGTTGGATCTATGGATCATGAAAATTTGGTCCCTCTCAGGGCCTACTATTTCAGTAGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTATCTGCTCTTTTACATGGAAACAAAGGAGCTGGCAGGACTCCATTGAATTGGGAAATCAGATCTGGAATTGCGCTTGGAGCTGCTCGTGGCATTGAATATCTGCATTCTCAAGGCCCTAATGTTTCCCATGGAAACATAAAATCTTCCAATATTCTTCTAACAAAATCCTATGATTCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCTTCCAGCCCCACCAGAGTTGCTGGTTACCGTGCACCAGAGGTCACCGATCCTCGTAAAGTATCCCACAAGGCTGATGTCTATAGCTTTGGCGTATTGCTTTTGGAGCTTTTGACAGGAAAGGCTCCTACTCACTCCCTTTTAAACGAGGAAGGAGTTGATCTACCCAGATGGGTGCAGTCAGTTGTTAGGGAGGAGTGGACTTCCGAAGTTTTTGACCTCGAGCTTCTTAGGTACCAAAACGTTGAGGAGGAGATGGTTCAGCTATTGCAGCTTGCAGTCGATTGTGCAGCTCAGTATCCTGATAAGCGTCCTACTATGTCCGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTTCACGAAGCTGTCAATCCACAACCCGACGCTGCTCATGACTCAGACGATGTGTCTTCTAGGTGA 1989 46.81 MQTQMGTRFISFFLLGFCFLLPTVKPDLASDRTALLALRSAVGGRTLMLWNVTDQNPCSWPGIQCEDNRVTVLRLPGAALFGQLPNGIFGNLTHLRTLSLRLNALSGQLPSDLSACINLRNLYLQGNEFSGLVPDFLFQLRDLVRLNLASNNFSGEISFGFNNLTRLKTLFLEKNHLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSSSFLGNSLCGRPLESCSGDLVVPTGEVGSNGGSGHKKKLSGGAIAGIVIGSVLGFVLILVILMLLCRKKSSKKTSSVDVATVKHPEVEIHGGKPAEEIENGGYSNGYAVPATAAAASAATVAAGTAKGEVNANGTGTKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEAVGSMDHENLVPLRAYYFSRDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDSRVSDFGLAHLVGPPSSPTRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTHSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMSEVTKRIEELRQSSLHEAVNPQPDAAHDSDDVSSR 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25289006 25291553 + ClG42_04g0110400.10 Clacu04g1104 247501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1104 662 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Clacu04g1104 662 Gene3D Phosphorylase Kinase; domain 1 336 442 - -
Clacu04g1104 662 Gene3D Transferase(Phosphotransferase) domain 1 443 658 - -
Clacu04g1104 662 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1104 662 SUPERFAMILY Protein kinase-like (PK-like) 372 642 IPR011009 -
Clacu04g1104 662 Pfam Protein kinase domain 372 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1104 662 Gene3D Ribonuclease Inhibitor 187 230 IPR032675 -
Clacu04g1104 662 PANTHER OS05G0588300 PROTEIN 11 653 IPR050994 -
Clacu04g1104 662 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Clacu04g1104 662 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Clacu04g1104 662 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Clacu04g1104 662 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Clacu04g1104 662 FunFam pollen receptor-like kinase 1 337 442 - -
Clacu04g1104 662 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524(InterPro)
Clacu04g1104 662 MobiDBLite consensus disorder prediction 639 662 - -
Clacu04g1104 662 CDD STKc_IRAK 374 637 - -
Clacu04g1104 662 FunFam Probable inactive receptor kinase At1g48480 443 645 - -
Clacu04g1104 662 SUPERFAMILY L domain-like 31 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1104 Clacu-Chr4:25289006 Clacu11g0407 Clacu-Chr11:3813284 3.50E-130 dispersed
Clacu01g0867 Clacu-Chr1:9908779 Clacu04g1104 Clacu-Chr4:25289006 2.00E-127 transposed
Clacu05g1292 Clacu-Chr5:13001832 Clacu04g1104 Clacu-Chr4:25289006 2.10E-164 transposed
Clacu09g2137 Clacu-Chr9:36146097 Clacu04g1104 Clacu-Chr4:25289006 1.20E-53 transposed
Clacu01g1194 Clacu-Chr1:18296964 Clacu04g1104 Clacu-Chr4:25289006 1.30E-39 wgd
Clacu10g1812 Clacu-Chr10:31850453 Clacu04g1104 Clacu-Chr4:25289006 6.30E-39 wgd
Clacu04g1104 Clacu-Chr4:25289006 Clacu06g1513 Clacu-Chr6:26040511 1.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73511 PF00069 Pkinase 4.60E-39 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1104 - - - 0.0