Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1106 ATGGCAGTAGATGGCCGAAGAGGGCCAAACAGAAGCCTCGAGACCCTTCTCGACATCGACAAGAAGGCCGTTGCTGCAAGAACAGTAGCGCCAGCGCCGCAGCTACAAAAGTCGGTGCCAGGACAAGGCTTGGAATTCAACAACTTGTCATACAGTGTCTTAAAGAAGTATAAAAAAGATGGAGTTTGGATCAAAAGAGAAACTTATCTTTTGAATGACATCTCAGGACAGGCAATGCGAGGCGAAATCATGGCTATCTTGGGGCCAAGTGGTGCCGGGAAATCTACATTTCTTGATGCCTTGGCTGGTCGAATGGCGAAAGGAAGCCTCGAAGGATCGGTTAGGATCGATGGAAAGCCGGTGACTGCAAGTTATATGAAGATGGTTTCATCTTATGTTATGCAAGATGATCAACTCTTCCCAATGTTAACTGTGTTTGAGACCTTCATGTTTTCAGCTGAGGTTAGGCTTCCATCCTCTATTTCCAGGGAGGAGAAGAAGAATAGAGTTTATGAGCTTATTGATCAACTAGGTTTACAGAGTGCCATGCATACTTATATAGGTGATGAAGGGAGAAGAGGAGTTTCAGGAGGTGAACGAAGAAGGGTGTCTATAGGAATCGACATCATTCACAAACCATCTCTCTTATTTTTGGATGAGCCAACCTCAGGCCTTGATTCAACTAGTGCTTTCAGTGTAGTTGAGAAGGTGAAAGAGATTGCTCGAAATGGCAGTATTGTCTTAATGACAATTCATCAGCCTTCTTACAGAATTCAATTGCTACTTGATCGCATAACTGTTCTTGCCAGGGGAAAACTGATATATGTTGGAAGTCCATTAAACCTTTCTGCTCATCTCTCTGGATTCGGAAGGCCGGTACCGGATGGTGAAAATAGCATCGAATATCTATTGGATGTGATCAAGGAATATGATGAATCAACAGTGGGCTTGGAGCCTCTTGTTGCATACCAACGCCATGGCATCAAACCTGATCACATTGCAAAAACTCCTGTTCCGAAAACACCTCGAACTCCTTATAAAAAGACCACGGGGCCAGGCCCGGGACTGGGGCCAAAGTTCCTAAACCTTCGTAGTCAAGCATTCTCTATGACCTCAGGGCCTAACTCAAGCCAGTTTGATTCTGCATATGCATATGAAGACAATGAGGATGATGAATTTGATAGATCTCTTGAACGTAAATCTACCAAAACTTCAGTGAATAATCGTAGCGGTGTTCATAATCCTCGTTTAGCTTCTGAATTTTACAAAGATTTGTCTGTTTGGGTGTATAATGGTGTTAAAAGAACTCCTCATCGATACCCATCATGGACTCCGGCAAGAACGCCAGGACAAACACCAGCAAAAACTCCTATGTCTGGAGTTAGAAGTGGAATGGTTTCAAGCCATATATCATCATCTCATGCCAAAATACCTTCAGTCTTCAGCATGTCAATGGACTCTCATTTGCCTTCTTTCCAAGACTTCGAAATTGAGGATGTTCTCGACGAGCCGGACCATGGTCCTAAATATGCAAATCCTTGGCTTCGTGAGGTCATTGTGCTTTCGTGGAGAACAATGCTCAATGTGGTCCGCACCCCAGAATTGTTTCTGTCGAGGGAGATTGTTTTGACAGTAATGGCATTGATTCTCTCCTCCATGTTCAAAAACCTCAGTCATGCTTCCTTTAGAGACATCAACAGGCTTCTCAACTTCTACATCTTTGCAGTTTGTCTCGTTTTCTTTTCATCAAACGATGCCGTCCCAACATTCATTCAAGAAAGGTTCATCTTCATTAGAGAGACTTCTCACAATGCATATCGAGCGTCGTCCTATGTCATCTCCTCCCTCATTGTTTATCTCCCATTTTTTGCCATTCAAGGCTTCACATTTGCTGCCATAACACAATTCTGGCTTCACTTGAAAAGCAACCTCTTCTTTTTCTGGATCACACTCTTTGCTTCACTCATTACAACGAATGCATACGTTATGCTTGTGAGCGCTCTCGTACCGAGTTATATCACAGGCTATGCAGTAGTTATCGCCACGACAGCCATTTTCTTCCTCACTTGTGGGTTCTTCTTGAAACGAACTCAAATACCAGTATATTGGAGGTGGCTCCATTACATCTCTGCAATAAAGTATCCATTTGAATCATTGTTGATCAATGAGTTCAAAGGTAAAAGATGCTATCAAGGCAATCCCAATGATCTTTCACCTGGACCTTTGGGAGATGTAAGGTTTAGCAGGTTGCACAATGTTTCCACCGATTTGAAACCCGGCTGCTTGCTGATCGGAGAAGACGTTTTGTTCTCAATGGACATTAATATGGAAAATATATGGTATGACATTGTGATCCTACTAGCGTGGGGAGCTCTTTACCGGCTGTTCTTCTATCTGGTTCTTAGATTTTACTCTAAGAATGAGAGAAAATGA 2433 42.99 MAVDGRRGPNRSLETLLDIDKKAVAARTVAPAPQLQKSVPGQGLEFNNLSYSVLKKYKKDGVWIKRETYLLNDISGQAMRGEIMAILGPSGAGKSTFLDALAGRMAKGSLEGSVRIDGKPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFSAEVRLPSSISREEKKNRVYELIDQLGLQSAMHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEKVKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGKLIYVGSPLNLSAHLSGFGRPVPDGENSIEYLLDVIKEYDESTVGLEPLVAYQRHGIKPDHIAKTPVPKTPRTPYKKTTGPGPGLGPKFLNLRSQAFSMTSGPNSSQFDSAYAYEDNEDDEFDRSLERKSTKTSVNNRSGVHNPRLASEFYKDLSVWVYNGVKRTPHRYPSWTPARTPGQTPAKTPMSGVRSGMVSSHISSSHAKIPSVFSMSMDSHLPSFQDFEIEDVLDEPDHGPKYANPWLREVIVLSWRTMLNVVRTPELFLSREIVLTVMALILSSMFKNLSHASFRDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAAITQFWLHLKSNLFFFWITLFASLITTNAYVMLVSALVPSYITGYAVVIATTAIFFLTCGFFLKRTQIPVYWRWLHYISAIKYPFESLLINEFKGKRCYQGNPNDLSPGPLGDVRFSRLHNVSTDLKPGCLLIGEDVLFSMDINMENIWYDIVILLAWGALYRLFFYLVLRFYSKNERK 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25320574 25324292 - ClG42_04g0110600.10 Clacu04g1106 247503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1106 810 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 295 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu04g1106 810 CDD ABCG_EPDR 41 277 - -
Clacu04g1106 810 MobiDBLite consensus disorder prediction 441 465 - -
Clacu04g1106 810 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu04g1106 810 Pfam ABC-2 type transporter 517 724 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Clacu04g1106 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 285 IPR027417 -
Clacu04g1106 810 MobiDBLite consensus disorder prediction 332 358 - -
Clacu04g1106 810 Pfam ABC transporter 71 223 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu04g1106 810 Gene3D - 43 289 IPR027417 -
Clacu04g1106 810 SMART AAA_5 80 280 IPR003593 GO:0016887(InterPro)
Clacu04g1106 810 MobiDBLite consensus disorder prediction 445 465 - -
Clacu04g1106 810 FunFam ABC transporter G family member 6 59 286 - -
Clacu04g1106 810 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 44 798 IPR050352 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Clacu04g1106 810 MobiDBLite consensus disorder prediction 390 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1106 K05681 - - csv:101210003 1460.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1888 Clacu-Chr1:31027510 Clacu04g1106 Clacu-Chr4:25320574 1.50E-158 dispersed
Clacu04g1106 Clacu-Chr4:25320574 Clacu09g2054 Clacu-Chr9:35376226 3.50E-124 dispersed
Clacu04g1106 Clacu-Chr4:25320574 Clacu10g2048 Clacu-Chr10:33901570 4.10E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28