Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1119 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGGCAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCTACTCGCGACGCCGAAATCCTAGAAAGGAAAGATTCAGGGTCGGGCAGAACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCGCCAAATAAGGAATAACAACACCAACAACTTTGCTGAAAAAAATACCAATAACATCAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGTGGCGGCGGCGGCGGCGGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACTACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGACTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1203 45.39 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELRQIRNNNTNNFAEKNTNNINNINNSASLQLMHCPAAALRGGGGGGGGGGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEEGGGGGGGGCGESETLQLFPLCSDTRNGETIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25462212 25465247 + ClG42_04g0111900.10 Clacu04g1119 247516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1119 400 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Clacu04g1119 400 Coils Coil 315 342 - -
Clacu04g1119 400 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Clacu04g1119 400 MobiDBLite consensus disorder prediction 325 340 - -
Clacu04g1119 400 Gene3D - 81 148 - -
Clacu04g1119 400 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Clacu04g1119 400 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Clacu04g1119 400 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 396 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Clacu04g1119 400 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Clacu04g1119 400 MobiDBLite consensus disorder prediction 325 348 - -
Clacu04g1119 400 FunFam WUSCHEL-related homeobox 4 81 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2088 Clacu-Chr1:32579382 Clacu04g1119 Clacu-Chr4:25462212 1.50E-22 dispersed
Clacu02g2108 Clacu-Chr2:34217127 Clacu04g1119 Clacu-Chr4:25462212 2.30E-23 dispersed
Clacu03g0164 Clacu-Chr3:1773911 Clacu04g1119 Clacu-Chr4:25462212 1.70E-25 dispersed
Clacu04g1119 Clacu-Chr4:25462212 Clacu08g1770 Clacu-Chr8:27124249 1.30E-23 dispersed
Clacu01g2422 Clacu-Chr1:34800897 Clacu04g1119 Clacu-Chr4:25462212 1.00E-14 transposed
Clacu04g1119 Clacu-Chr4:25462212 Clacu06g1538 Clacu-Chr6:26300750 2.10E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47538 PF00046 Homeodomain 1.60E-19 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1119 - - - 0.0