Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1121 ATGGGCACTGTAATCGACTCCCATTTCTTGGCCCTCACTGCCATTGTTACTATTGGGTATCAACTGTCCTTCTTTATAATCACAGCTCTTCTCAAGTTTGACAAAGTCACTGATTTCGCTGGTAGCACAAATTTTGTGATACTTGCTGTTTTGACTCTAGTTCTTAAAGGCAGTTGGCATTTTAGACAGGTAATTCTGTCTGTGCTTGTAGTGACATGGGGTCTTCGCCTTGGTTTTTTCTTGTTAATGAGGATTTTGCAATGGGGAGAGGATCGGCGTTTTGATGAAATGCGTAGTAATTTGGGAAAATTGGCAGTTTTCTGGATATTTCAGGCTGTCTGGGTCTGGACCGTCAGTTTACCTGTCACAGTGGTCAATGCAAGCAATCACAATCCACCTCTCCGAGCTGCGGATGTAATTGGGTGGATTATGTGGTTGGTGGGTGTTGTAACCGAAGCTACAGCTGATCAACAAAAATTGGCTTTTAAAAACTCTCCAGAAAATAGGGGGAAGTGGTGCAACGTTGGACTTTGGAAGGTCTCACGTCATCCTAATTACTTTGGTGAGATCTTTCTTTGGTGGGGAATCTTCGTTTCTTCCACGCCCGTTCTGGAAGGTGCTGAGTGGCTTGTGATACTTGGGCCAATATTCCTCACATTGCTGCTTCTTTTTGTCAGTGGGATCCCACTACTTGAGGAATCAGCAGATAAGAAATTTGGGAATGTGACTGAATACGTACGTTATAAAAGAGAGACTAGCCCCCTGATCCCACTGCCTACCGCAATATATGGAAACCTGCCCTCGTGGTTCAAGAAAATTTTTCTATTTGAATTACCTTTTTACAGCCGCAATCTTCCCGGGGGTGACCAAAACTGGTATAGAACAAGCAAGGGAGAAAGCAGTGATAGATTGAAGATGGAGAAAAGTATGGGATTGAATTGCCAGTGTTCTATGATGGCAAAAAGCAGCAAAAGTAACAAGGCAATTGTTCAACATCTTCCCCTCAGTGCTGATGCCTGTAATTTGAATCAGATTGACTCCAGTGGGCCAAGAAGCCATTGGATATCTAACCCAGCTGGCATGACATGCTTTTCACCTTGGAAAGATACGGCTAAAGGAAAACTACAGAAATTCACTCATACTGTCACAGCACAGCTCATAATGATACTGTCAATTCCACATTATCAACGGGGCAAGAGACTGTAA 1206 43.37 MGTVIDSHFLALTAIVTIGYQLSFFIITALLKFDKVTDFAGSTNFVILAVLTLVLKGSWHFRQVILSVLVVTWGLRLGFFLLMRILQWGEDRRFDEMRSNLGKLAVFWIFQAVWVWTVSLPVTVVNASNHNPPLRAADVIGWIMWLVGVVTEATADQQKLAFKNSPENRGKWCNVGLWKVSRHPNYFGEIFLWWGIFVSSTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNVTEYVRYKRETSPLIPLPTAIYGNLPSWFKKIFLFELPFYSRNLPGGDQNWYRTSKGESSDRLKMEKSMGLNCQCSMMAKSSKSNKAIVQHLPLSADACNLNQIDSSGPRSHWISNPAGMTCFSPWKDTAKGKLQKFTHTVTAQLIMILSIPHYQRGKRL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25475248 25480411 - ClG42_04g0112100.10 Clacu04g1121 247518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1121 401 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 141 209 - -
Clacu04g1121 401 Pfam Protein of unknown function (DUF1295) 24 252 IPR010721 -
Clacu04g1121 401 Gene3D - 58 258 - -
Clacu04g1121 401 PANTHER 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 3 271 IPR010721 GO:0016020(PANTHER)
Clacu04g1121 401 FunFam 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) 59 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1121 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g219 . . . . . . . . Cmo13g01031 Cmo18g00052 . . . . . Cpe20g00147 . . . . . . . . . . . . . . . . . . . Lsi02g00227 Csa01g00709 Chy12g01402 Cme12g01835 . . . . . Bpe15g00511 . . Sed08g2753 . . Cma13g00996 Cma18g00069 Car13g00829 Car18g00060 Cpe09g01117 . Bhi08g01287 Tan05g2197 . Lac10g0285 Hepe07g2358 . . Cla04g01052 Cam04g1095 Cec01g1610 Cco01g1656 Clacu04g1121 Cmu04g1105 Cre01g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006383 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38