Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1122 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTGTCTTCGCCTGATAAGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCAGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGCGAAATCTTAGTTACGGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGTTTCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAATGTTGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTCGATCCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGACGCTACTCTTTATGAGCTGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGTTGGTAACGAAAGCACAAAATCCGATATAACCCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGGCTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACACCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACGGCTGGAACTGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGCGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTAGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGTTGCAGGTGGATTGTTTGAACAGAAGATGACAAATGGGAATGGAGAAACAAAGCATTTTGTTAACAGCTTATATATTCTTTCTATCTATCTTCTTGTAGTTGTGATCATGGCTTCTCTTTTCGGATCAACTGCATTTCTCTGCCACTCACTTACCAGAACTTATCACTTAGCTTCCTCACAAACCCCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCCTCCCCATCTCCATCTCTGAGCAATTCTTCGTCGGAGCAACTAAAACCAGCCCCATCAAAGGTGGAGCAACAGAGGCCTACCACCAATTTAGACTCTACGGATTGGATTGCTTCAACTTTAACAAGGCGATTCGGGCTCGGCGCTGGCCTTGCGTGGGCTGCTTTTCTCGCCGTTGGTGTAGTCTCCGAACAGATCAAAACTCGCCTCGAAGTCTCTCAAGAAGAAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTAGTGCTACCCAATGGCATAAGGTATTTCGAGCTGCGCGTTGGCGGCGGTGCCACACCAAGAACCGGGGACTTGGTTGTGATTGATCTCAAGGGAAAAGTACAAGGCAGTGATGAAGTATTTGTAAATACATTTGAAAAGGAAAGTAAGCCATTGGCTCTGGTGATGGGCTCAAGACCTTACAGCAAAGGAATGTGTGAAGGTTTGGAATATGTGTTGAGATCCATGAAATCAGGTGGTAGGAGGAGAGTTATAATTCCTTCTAGTTTGGGGTTTGGAGAGAAGGGTGCTGATTTAGGTAATGGGGTTCAAATTCCTCCATTTGCAACTTTAGAGTATGTAGTTGAGATTGATAAGGTTTCCATTGCACCTGCTTGA 3843 45.54 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSPDKLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVQKLAVLVSDHMGGPVGDPEKMLRKWRNLSYGLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNLSATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDPREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYELRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAVAGGLFEQKMTNGNGETKHFVNSLYILSIYLLVVVIMASLFGSTAFLCHSLTRTYHLASSQTPSPSTPPSQPPQTPSPSPSLSNSSSEQLKPAPSKVEQQRPTTNLDSTDWIASTLTRRFGLGAGLAWAAFLAVGVVSEQIKTRLEVSQEEANTRNVEKEEEVVLPNGIRYFELRVGGGATPRTGDLVVIDLKGKVQGSDEVFVNTFEKESKPLALVMGSRPYSKGMCEGLEYVLRSMKSGGRRRVIIPSSLGFGEKGADLGNGVQIPPFATLEYVVEIDKVSIAPA 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25482086 25497455 - ClG42_04g0112200.10 Clacu04g1122 247519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1122 1280 SMART serkin_6 722 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 PANTHER SERINE-THREONINE PROTEIN KINASE 68 975 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu04g1122 1280 FunFam Peptidylprolyl isomerase 1130 1278 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 1 116 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 16 44 - -
Clacu04g1122 1280 Coils Coil 1135 1155 - -
Clacu04g1122 1280 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 380 406 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 1051 1099 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 97 116 - -
Clacu04g1122 1280 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Clacu04g1122 1280 SUPERFAMILY Protein kinase-like (PK-like) 703 972 IPR011009 -
Clacu04g1122 1280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 Gene3D - 1137 1275 IPR046357 GO:0003755(InterPro)
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 378 457 - -
Clacu04g1122 1280 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1178 1276 IPR001179 GO:0003755(InterPro)
Clacu04g1122 1280 FunFam Serine/threonine-protein kinase isoform 1 713 800 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 520 568 - -
Clacu04g1122 1280 FunFam Serine/threonine-protein kinase CTR1 801 984 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 520 538 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 1073 1099 - -
Clacu04g1122 1280 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1173 1272 IPR001179 GO:0003755(InterPro)
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 677 703 - -
Clacu04g1122 1280 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524(InterPro)
Clacu04g1122 1280 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Clacu04g1122 1280 SUPERFAMILY FKBP-like 1103 1275 - -
Clacu04g1122 1280 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1122 1280 Gene3D Transferase(Phosphotransferase) domain 1 801 986 - -
Clacu04g1122 1280 CDD STKc_MAP3K-like 728 974 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 51 88 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 1058 1072 - -
Clacu04g1122 1280 MobiDBLite consensus disorder prediction 677 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1122 Clacu-Chr4:25482086 Clacu05g1942 Clacu-Chr5:28609555 2.00E-190 dispersed
Clacu04g1122 Clacu-Chr4:25482086 Clacu04g1031 Clacu-Chr4:24581566 1.50E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73512 PF07714 PK_Tyr_Ser-Thr 8.00E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1122 - - - 0.0