Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1123 ATGCTGCAATTCAATGGCGGAGAACTGAATCAGAACCGAGGAAGGCGACCGCTGGTTTTATACGGTTTGATACATATTGTAATCGAATTGACGTTAATCTGCTCTACCATGGATCGCCTCAATAAGGGTGATAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTATGGAGTTGTTGGTTCTGCAATTGATACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATTCGTATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAGTTTTTTCTCTACCAGCTTCTTAGTGGCCTAAAATATATTCATGCGGCAAATGTCCTTCATCGAGATTTGAAGCCGAAAAACATACTTGCTAATGCTGACTGCAGACTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCGCCATCTACTATTTTTTGGACAGATTATGTTGCAACTCGATGGTATCGCGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCGATAGATATATGGAGTATCGGATGCATATTTGCGGAAATGCTTACGGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAACCAGAGGCCATAGCGAAGATTCGGAATGAGAAGGCAAGAAGGTACCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCATTGGCACTTTGTTTACTGGAACGTCTCCTGGCATTTGATCCCAAATGTCGTCTCACAGCTGCAGAGGCACTTGCTGATCCTTACTTCAACGGTATGGCGAAACCAGAACTTGAGCCTTCTATTCAACCAATTTCGAAACTTGAGTTTGAGTTTGAGAGGAGGAGGTTATCAAAAGATGATGTTAGAGAGTTGATATATGCGGAGATTTTAGAGTATCATCCCCAGATGCGTCAGGAGTGTCTACGTGATGGAGATCATCAATCTACCTTTATGTATCCAAGTGGCGTCGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCATGGTATAGGTGAAAGAAGAAGTCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGTCCTACTGAGCAGAACAACACTGAGAATAAAACTGATTTTGAAAGGGGGAAAGATAAGAGTTCTTATCTCTTGAAAAGTGCTAGTATTAGTGCATCGAGGTGTGTTGGGGTAACACCAAAGGAGAAGTCTGAGGCGGAAGAAACGAGTACTGAAGTGAAAAATGAAGCAGTGGATGGCTTGTCTCAGAAGATCGCAGTCCTTCAGACTTGA 1569 41.62 MLQFNGGELNQNRGRRPLVLYGLIHIVIELTLICSTMDRLNKGDKQSEFFTEYGEASRYQIQEVVGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPEPEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALCLLERLLAFDPKCRLTAAEALADPYFNGMAKPELEPSIQPISKLEFEFERRRLSKDDVRELIYAEILEYHPQMRQECLRDGDHQSTFMYPSGVDRFKLQFAHLEEHHGIGERRSPLQRQNISLPRERVSPTEQNNTENKTDFERGKDKSSYLLKSASISASRCVGVTPKEKSEAEETSTEVKNEAVDGLSQKIAVLQT 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25509285 25514004 + ClG42_04g0112300.10 Clacu04g1123 247520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1123 522 ProSitePatterns Protein kinases ATP-binding region signature. 65 89 IPR017441 GO:0005524(InterPro)
Clacu04g1123 522 Gene3D Phosphorylase Kinase; domain 1 75 396 - -
Clacu04g1123 522 FunFam Mitogen-activated protein kinase 145 373 - -
Clacu04g1123 522 Pfam Protein kinase domain 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1123 522 CDD STKc_TDY_MAPK 58 395 - -
Clacu04g1123 522 SMART serkin_6 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1123 522 FunFam Mitogen-activated protein kinase 47 152 - -
Clacu04g1123 522 ProSitePatterns MAP kinase signature. 94 197 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1123 522 Gene3D Transferase(Phosphotransferase) domain 1 145 373 - -
Clacu04g1123 522 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Clacu04g1123 522 MobiDBLite consensus disorder prediction 432 470 - -
Clacu04g1123 522 MobiDBLite consensus disorder prediction 487 507 - -
Clacu04g1123 522 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 56 391 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu04g1123 522 ProSiteProfiles Protein kinase domain profile. 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1123 522 MobiDBLite consensus disorder prediction 439 460 - -
Clacu04g1123 522 MobiDBLite consensus disorder prediction 492 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1123 Clacu-Chr4:25509285 Clacu06g0566 Clacu-Chr6:6377019 4.60E-186 dispersed
Clacu11g0762 Clacu-Chr11:7460529 Clacu04g1123 Clacu-Chr4:25509285 4.60E-24 dispersed
Clacu04g1123 Clacu-Chr4:25509285 Clacu06g1542 Clacu-Chr6:26356467 6.60E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73513 PF00069 Pkinase 1.80E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1123 - - - 0.0