Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1125 ATGGCTGCCTCTGTTGATCCTTTGGTGGTCGGGAGGGTGATCGGCGACGTTGTCGACATGTTTGTGCCGACCGCTACCATGTCGGTCTACTTCAACTCCAAGCATGTCACTAATGGCTGTGACATTAAGCCTTCTCTTGCTGTTAACCCTCCTAGGCTCGTCATTTCTGGTCATCCTTGCGATCTTTATACTCTGGTGATGACGGACCCGGATGCGCCGAGTCCCAGTGAACCCCATATGAGAGAATGGGTGCACTGGATAATTGTGGACATTCCTGGAGGTGCAAATCTGAGCCAAGGAAGGGAGATTGTGCCATACTCGGGGCCCCGACCGCCGATTGGAATTCACCGTTACATCCTGTTGTTGTTCAAGCAAAAGGGGCCAATTGGTATGATTGATCAGCCAGCAAGCCGAGCCAATTTCAACACTCGCCTCTTTGCAAGGCATTTCAATCTCGACCTGCCAGTTGCTGCTACCTATTTTAACTCTCAGAAGGAGCCTGCTACCAAAAAATACGCTCTTGCAGCCTAA 531 50.85 MAASVDPLVVGRVIGDVVDMFVPTATMSVYFNSKHVTNGCDIKPSLAVNPPRLVISGHPCDLYTLVMTDPDAPSPSEPHMREWVHWIIVDIPGGANLSQGREIVPYSGPRPPIGIHRYILLLFKQKGPIGMIDQPASRANFNTRLFARHFNLDLPVAATYFNSQKEPATKKYALAA 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25523935 25525679 + ClG42_04g0112500.10 Clacu04g1125 247522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1125 176 Pfam Phosphatidylethanolamine-binding protein 48 160 IPR008914 -
Clacu04g1125 176 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 8 166 IPR035810 GO:0009737(PANTHER)|GO:0010030(PANTHER)
Clacu04g1125 176 SUPERFAMILY PEBP-like 5 170 IPR036610 -
Clacu04g1125 176 CDD PEBP_euk 25 163 IPR035810 -
Clacu04g1125 176 FunFam Terminal flower 1 1 172 - -
Clacu04g1125 176 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 63 85 IPR001858 -
Clacu04g1125 176 Gene3D - 1 172 IPR036610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1125 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0545 Clacu-Chr3:5663460 Clacu04g1125 Clacu-Chr4:25523935 5.80E-53 dispersed
Clacu04g1053 Clacu-Chr4:24786249 Clacu04g1125 Clacu-Chr4:25523935 4.60E-42 dispersed
Clacu04g1125 Clacu-Chr4:25523935 Clacu05g0937 Clacu-Chr5:8290553 2.90E-44 dispersed
Clacu04g1125 Clacu-Chr4:25523935 Clacu10g1883 Clacu-Chr10:32441887 9.40E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g228 Blo04g00843 . . . . . . . . Cmo18g00048 . . . . . . . . . . . . . . . . . . . . . Cone2ag0756 . . . Lsi02g00223 . . . . . . . . Bpe15g00518 Bma03g00909 . Sed01g1758 . . . Cma18g00062 . Car18g00054 Cpe09g01122 . Bhi08g01279 Tan05g2206 Cmetu04g3049 Lac10g0278 Hepe07g2363 . . Cla04g01058 Cam04g1100 Cec01g1615 Cco01g1660 Clacu04g1125 Cmu04g1109 Cre01g1409 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002658 1 2 1 2 1 2 3 2 1 1 2 2 2 1 2 3 2 2 2 2 2 2 2 3 2 2 2 2 2 1 56