Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1130 ATGGATATCGAGGAGGATATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTCCTAATCCAGATGCAAAGATGGAGGAAGTTGTGAAATCCGATAATCCGGAAGAAGATGCAAGGACAGAAGAAATTGTGAAGTCCAATAAGATGGAAGAAGAGGACCATCCCCAGCAAGCCCAAGCTATCCACGTTCAAGAACAAGTGAAGGAGAACATATCTGCTAAGGAGAAGGAAATTTCTTCAACTGAAAATGAAGATGAAGGGGATGTGGAGTTAGACCGCAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGAGGCCAGATACTTTTCCTTAGCAATCAGGTTGACGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGACAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCGCATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTCCCGAATATGATCAGTGGGGCATCCCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAGACTTTGGGTGTTGCTAAGCTTCTTGTTGTGGTGAATAAGATGGATGATCACACAGTACAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGTCCGTGCTTCTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATCGACAAGTTCAAGGACATGGGAACAACTGTTATGGGTAAAGTCGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATTGGTTATGCCAAACAAGATACAAGTGAAAGTTACAGCTGTGATGTGTGATGAAAGTAAAGTCAAGAGTGCAGGACCTGGGGAGAATCTTCGTGTTAGAGTAGCTGGAATTGAAGAAGAAGATATAGCGTCTGGGTTTGTACTATCAAGCATTGCAAAACCAATACCTTGTGTTTCTGAGTTTGTTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCGGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAAATCATAGAGCTGCTACAGCAGATCGATCCAAAGACTAGAAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCTGATGTTCCTCAGCTCGGAAGATTTACACTTCGTACTGAAGGGAAGACAGTTGCCGTAGGAAAAGTCACTGATATTCCAGCTGCAAGCAATTAA 1584 41.41 MDIEEDIRALELDPPDVNGVPNPDAKMEEVVKSDNPEEDARTEEIVKSNKMEEEDHPQQAQAIHVQEQVKENISAKEKEISSTENEDEGDVELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDHTVQWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWNGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLVMPNKIQVKVTAVMCDESKVKSAGPGENLRVRVAGIEEEDIASGFVLSSIAKPIPCVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPAASN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25574266 25583325 + ClG42_04g0113000.10 Clacu04g1130 247527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1130 527 Coils Coil 66 86 - -
Clacu04g1130 527 Gene3D Translation factors 325 409 - -
Clacu04g1130 527 Pfam Elongation factor Tu domain 2 340 406 IPR004161 GO:0005525(InterPro)
Clacu04g1130 527 SUPERFAMILY Translation proteins 320 412 IPR009000 -
Clacu04g1130 527 Coils Coil 123 143 - -
Clacu04g1130 527 PANTHER TRANSLATION FACTOR 95 520 IPR050100 GO:0003747(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0018444(PANTHER)
Clacu04g1130 527 MobiDBLite consensus disorder prediction 70 91 - -
Clacu04g1130 527 FunFam Putative translation elongation/initiation factor family protein 414 523 - -
Clacu04g1130 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 331 IPR027417 -
Clacu04g1130 527 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 75 320 - -
Clacu04g1130 527 CDD eRF3_C_III 414 522 - -
Clacu04g1130 527 CDD EF1_alpha 100 321 - -
Clacu04g1130 527 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 417 522 IPR009001 -
Clacu04g1130 527 Gene3D - 74 319 IPR027417 -
Clacu04g1130 527 Pfam Elongation factor Tu GTP binding domain 96 296 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 PRINTS GTP-binding elongation factor signature 195 206 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 PRINTS GTP-binding elongation factor signature 100 113 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 PRINTS GTP-binding elongation factor signature 239 248 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 PRINTS GTP-binding elongation factor signature 179 189 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 MobiDBLite consensus disorder prediction 1 91 - -
Clacu04g1130 527 Gene3D Translation factors 415 523 - -
Clacu04g1130 527 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 324 410 - -
Clacu04g1130 527 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 96 325 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu04g1130 527 CDD eRF3_II 327 408 - -
Clacu04g1130 527 Pfam GTP-eEF1A C-terminal domain-like 418 520 IPR054696 -
Clacu04g1130 527 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 152 167 IPR031157 -
Clacu04g1130 527 MobiDBLite consensus disorder prediction 27 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1130 K03267 - - csv:101217809 919.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1130 Clacu-Chr4:25574266 Clacu09g2074 Clacu-Chr9:35537636 6.70E-76 dispersed
Clacu04g1130 Clacu-Chr4:25574266 Clacu09g2073 Clacu-Chr9:35525486 8.70E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44