Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1139 ATGGCGACCCTTTCGCTGTCTTATTTCGATCTCTCTTCGTTCAGCCGGAGCGAAAACCGCCGTCGTCAACTCCACCGATTCTGGGGACAACAGAAATCAGAACCCTCGTGGGCCTTACGCCGACGGAATGTGGTCGGCGTGAAGTCCTTCAGGGCATTTTACGGCGGGGCGTCTGGATTGAATGTCAATAAGGAGAAGGGTTTGATCTGTACTGCCGACGAGCTTCATTACGTCTCTGTTCCTAACTCTGATTGGAAACTTGCGCTCTGGCGTTACTTGCCTTCTCTTCGGGCGCCATCAAGGAATCATCCGCTGTTGCTGTTATCAGGGATTGGAAGCAATGCTCTTGGATATGACCTTTCTCCAGAGTCCTCATTTGCTCGCTACATGTCCAACCATGGATACGACACATGGATTCTTGAAGTTCGAGGATTGGGACTTAGCACCGACAGAGGAGAAATGAAGTATACTGAACAGATACGATCTGAAACTCTGTCAAAACAGCCATTAGTGAAGGCTAGTACATATGACAGTTCTGTGCGTTCCAGTATTTCTTCCAGAGATGGACAGACTTCAAACATTGCTGCTCAACTTAGGCAATGGAATAAAAATCTTATCAATATAATTGACGGAGCTCAACAACTGAGTCCATTCCAGCCTTTTAATTTACAAGGTGTTACCTCTGCTTTAGAAGAGATCCAGGAACAACTTGATGTGTATGAGAAGTATGATTGGGACTTTGACAACTACTTGGAAGAAGACATGCCTGCTGCGATGGAGTACATAAGGAACCAATCCAAACCAAATGATGGCAAGTTACTAGCGATCGGCCACTCGATGGGGGGTATCCTGCTGTATGCTATGATCTCTTGCTGTAGCTCTAAAAAAGTTGATCCGCAGTTGGCATCAGTTGTTACTCTGGCTTCATCACTTGATTACAGACCTTCAAATTCGTCACTCAGACTTCTTTTACCTTTGGCAAATCCTGCACAAAATTTTAATGTTCCAGTGATTCCCATTGGGCCATTGCTTGTTATTGCTCATCCTCTCGCATCACGTCCTCCTTATGTCTTGGCTTGGTTAAAGGGTCAAATCTCTGCAGACGACATGTTACATCCCACATTGCTTGAGAAGCTTGTGATGAATGGCTTTGGATCTGTGCCTGCAAAGGTTCTTGTGCAGCTATCGTCTGTTTTTGAAGAGGGTGGCTTACGTGACAGGAGTGGTACATTCAAATACAAGGATTATCTACGCCAAGGCAATGTTCCAATCCTTGCTCTTGCTGGAGACCAAGACCTTATTTGTCCACCTGAAGCTGTATATGAAACTGTGAAAGAAATTCCTAGGCAGTTGGTTTCCTACAAAGTTCTCGGCAAGCCTGGTGGTCCTCACTATGCTCACTATGATATTGTGGGAAGTCGTTTGGCATCAAGTGAAGTATATCCATTGATAACCGATTTTCTCAACCACCATGACGCGATTTGA 1485 45.32 MATLSLSYFDLSSFSRSENRRRQLHRFWGQQKSEPSWALRRRNVVGVKSFRAFYGGASGLNVNKEKGLICTADELHYVSVPNSDWKLALWRYLPSLRAPSRNHPLLLLSGIGSNALGYDLSPESSFARYMSNHGYDTWILEVRGLGLSTDRGEMKYTEQIRSETLSKQPLVKASTYDSSVRSSISSRDGQTSNIAAQLRQWNKNLINIIDGAQQLSPFQPFNLQGVTSALEEIQEQLDVYEKYDWDFDNYLEEDMPAAMEYIRNQSKPNDGKLLAIGHSMGGILLYAMISCCSSKKVDPQLASVVTLASSLDYRPSNSSLRLLLPLANPAQNFNVPVIPIGPLLVIAHPLASRPPYVLAWLKGQISADDMLHPTLLEKLVMNGFGSVPAKVLVQLSSVFEEGGLRDRSGTFKYKDYLRQGNVPILALAGDQDLICPPEAVYETVKEIPRQLVSYKVLGKPGGPHYAHYDIVGSRLASSEVYPLITDFLNHHDAI 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25629133 25632600 + ClG42_04g0113900.10 Clacu04g1139 247536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1139 494 PIRSF UCP031088_abhydr 173 494 IPR016969 -
Clacu04g1139 494 PIRSF UCP031088_abhydr 16 189 IPR016969 -
Clacu04g1139 494 ProSitePatterns Prolyl endopeptidase family serine active site. 254 284 IPR002471 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu04g1139 494 Gene3D alpha/beta hydrolase 73 166 IPR029058 -
Clacu04g1139 494 Gene3D alpha/beta hydrolase 192 490 IPR029058 -
Clacu04g1139 494 SUPERFAMILY alpha/beta-Hydrolases 76 489 IPR029058 -
Clacu04g1139 494 PANTHER LYSOSOMAL ACID LIPASE-RELATED 73 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0597 Clacu-Chr1:6173456 Clacu04g1139 Clacu-Chr4:25629133 8.30E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g277 . Blo16g00128 . . . Bpe13g00365 . . . Cmo18g00043 . . . . . . . . . . . . . . . . . . . . . Cone2ag0742 . . . Lsi02g00213 Csa01g00695 Chy12g01416 Cme12g01852 . . . . . . . . Sed08g2743 . . . Cma18g00053 . Car18g00047 Cpe09g01127 . Bhi08g01263 Tan05g2228 Cmetu09g1201 Lac10g0266 Hepe07g2371 . . Cla04g01069 Cam04g1113 Cec01g1627 Cco01g1673 Clacu04g1139 Cmu04g1121 Cre01g1422 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007326 0 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 9 1 0 37