Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1145 ATGCCATCTGATGTGGAAATTTTGGGATCGGAATCGGCCACGATAATATTAAGTATCACGATGACTATCAAAACTCCTGCAACACCAGCTTCGAAAACAGAGAGGACACCAGCATCAACACCCGGAGGACCTCGATCTAAGGAAGAGAAGATCGTTGTTACTGTGCGGTTAAGGCCTCTGAGTAAAAAGGAGCAGCAAGCGAAAGATCAAATGGCATGGGAGTGCATTGATGATCATACCATTGTATACAAACCTCAGCCTCAGGAACGTCAAACTCAACCAGCCTCGTTTACATTTGATAAAGTTTTCAGTCCCACTTCTTTGACTGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCCCTAATGGGCATCAATGCCACCATATTCGCCTATGGGCAAACTAGTAGTGGAAAGACATTTACAATGAGGGGGATAACTGAGAAAGCTGTTAATGATATCTACAAACATATTAGTAATACACCCGAGAGAGATTTTACAATAAGAATTTCTGGACTGGAAATATACAATGAGAATGTTAGGGATCTACTGAATACAAAATCAGGTCGGAATCTAAAGCTTCATGATGACCCAGAGAAAGGTACAATGGTTGAGAAATTAGTAGAGGAAACGGCAAATAATGATCAACATTTGAGGCATTTGATTAGCATCTGTGAGGCTCAAAGACAAGTTGGTGAAACTGCCTTGAATGACTATAGCTCTCGGTCACACCAGATCATAAGGCTGACAATTCAAAGTACCCTACGAGAAAATTCAGATTGCGTTAGATCTTTTGTGGCAAGCTTGAATTTTGTTGATCTAGCTGGAAGTGAGAGAGCTTCACAGACACATGCTGATGGTGCTAGGCTAAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGTCTTGGAAAGAGAAGTGGTCATATACCTTATAGAGACTCAAAGCTCACCCGCATATTGCAGCACTCCCTTGGTGGAAATGCACGAACCGCCATTATTTGCACTTTGAGTCCAGCACTGACTCATGTTGAACAATCGCGGAACACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTCAATATGGTTGTATCGGACAAACAATTGGTCAAACATTTACAAAAGGAAGTTGCCAGGCTAGAAGCAGAACTGCGCACTCCTGATCCAAAAAGGGAGAAAGATTTAAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAAACGACAAAGAGACCTTGCTCAATCCCAGGTTGATGAGCTCCGCAGAAAACTTGAGGAAGACCAGCAGGGTTCCAACCCAATTGAATCTGCCCGTCCTCCAGTGAAGAAGTGTTTGTCCTTTACTGGTACATTGCCTCAGAAACTCGACAGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCTATGATGAGACAATCATCGACTGCTCCCTTCACACTTATGCATGAAATTCGCAAGCTGGAACATCTCCAGGAGCAGCTTGGGGAGGAAGCTAATAGAGCCCTCGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACAATTGCCAAACTACAAGCTGAAATAAGAGAAATGAGATCAGTCCGCTCAGAACCAAAAGAGGTTGAGGTTGGGAACACTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAGGAGCAGCTTGAAAATGTTCAGAAGTCTATTGACAAGTTGGTAATGTCTCTACCAAGCAATTATCAGCAGTTCATGAGCAGTGAATCAACCCCCAAACAAAAAAGTTATACTAAAAAGAAGAAATTGCTTCCTTTGGCCTCAAGTAATGTTACCAACCGGCAAAACTTTTTAAGATCGCCATGCTCCCCTTCAACAACTCCCCAGCAAGTACTGGAGTCCGATACTGAAAATAGAGCTCCTGAGAATGATGATGACTTCTCATCTGAGATTCTGCTCGAGTCTGAGAAAGAGACTCCAACAAAGAGTGAAGAAGGTGGAGATGTCTCATCAAAGGAGAACACTCCTTGTTATAGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATAAGAGCATATGTGACAGAATTGAAAGAACGTGTGGCTAAACTGCAGTACCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAATGAAGCAGCTGGCAACAAATTAGATTGTGATGAAAACACATTTGAGCAAGATGACGACCAAGTTCCGTGGCATGTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCTATGTCTCCATTATTCACAGATCTCAGTTCTACTTGTTATTCAAGGGCGACGAGGCTGATCAGATTTACCTGGAAGTAGAGATGAGGCGCTTAACATGGCTGCAGGATCACCTAGCGGAATTTGGCAATGCTAGTCCAGCTCACTTTGGGGACGAGCCAACAATCTCTCGCTCGTCAAGCATGAGGGCATTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTTCACGATTGTCAGCAGAAGAAAGAGATGCCTTGTACATTAAATGGGAAGTACCACTTGAAGGGAAACAGAGGAAAATCCAATTTGTAAACAAGCTCTGGACAAATCCTCACGACCCCAAGCATATTCAGGACAGTGCAGAGATAGTGGCAAAGCTTGTTGGGTTCTGTGAAGGAGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGTTGTTCCTTCCGACAAAAGACCATGGATCATGGGATGGAACCCAATTTCAAACCTTCTTAATTTGTGA 2943 43.02 MPSDVEILGSESATIILSITMTIKTPATPASKTERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQMAWECIDDHTIVYKPQPQERQTQPASFTFDKVFSPTSLTEAVYEEGVKNVALSALMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYKHISNTPERDFTIRISGLEIYNENVRDLLNTKSGRNLKLHDDPEKGTMVEKLVEETANNDQHLRHLISICEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSLGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELKRQRDLAQSQVDELRRKLEEDQQGSNPIESARPPVKKCLSFTGTLPQKLDSKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSEPKEVEVGNTIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPSNYQQFMSSESTPKQKSYTKKKKLLPLASSNVTNRQNFLRSPCSPSTTPQQVLESDTENRAPENDDDFSSEILLESEKETPTKSEEGGDVSSKENTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFEQDDDQVPWHVTFREQRQQIIELWDACYVSIIHRSQFYLLFKGDEADQIYLEVEMRRLTWLQDHLAEFGNASPAHFGDEPTISRSSSMRALRREREFLAKRLTSRLSAEERDALYIKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQDSAEIVAKLVGFCEGGNMSREMFELNFVVPSDKRPWIMGWNPISNLLNL 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25670143 25674604 - ClG42_04g0114500.10 Clacu04g1145 247542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1145 980 MobiDBLite consensus disorder prediction 26 49 - -
Clacu04g1145 980 MobiDBLite consensus disorder prediction 436 459 - -
Clacu04g1145 980 MobiDBLite consensus disorder prediction 673 705 - -
Clacu04g1145 980 Gene3D Kinesin motor domain 43 403 IPR036961 -
Clacu04g1145 980 SMART kinesin_4 48 380 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 MobiDBLite consensus disorder prediction 621 717 - -
Clacu04g1145 980 ProSiteProfiles Kinesin motor domain profile. 50 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 Coils Coil 536 556 - -
Clacu04g1145 980 Coils Coil 381 401 - -
Clacu04g1145 980 MobiDBLite consensus disorder prediction 26 40 - -
Clacu04g1145 980 FunFam Kinesin-like protein 44 403 - -
Clacu04g1145 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 406 IPR027417 -
Clacu04g1145 980 Coils Coil 408 449 - -
Clacu04g1145 980 PANTHER CENTROMERE PROTEIN E 46 958 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Clacu04g1145 980 MobiDBLite consensus disorder prediction 639 672 - -
Clacu04g1145 980 Coils Coil 507 527 - -
Clacu04g1145 980 Coils Coil 586 613 - -
Clacu04g1145 980 ProSitePatterns Kinesin motor domain signature. 270 281 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Clacu04g1145 980 CDD KISc_CENP_E 50 372 - -
Clacu04g1145 980 Pfam Kinesin motor domain 56 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 PRINTS Kinesin heavy chain signature 271 289 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 PRINTS Kinesin heavy chain signature 237 254 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 PRINTS Kinesin heavy chain signature 322 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 PRINTS Kinesin heavy chain signature 127 148 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Clacu04g1145 980 Pfam Domain of unknown function (DUF3490) 798 960 IPR021881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1145 K11498 - - csv:101215425 1816.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1145 Clacu-Chr4:25670143 Clacu11g0160 Clacu-Chr11:1238578 8.60E-287 dispersed
Clacu04g1145 Clacu-Chr4:25670143 Clacu02g0496 Clacu-Chr2:4529874 2.30E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73