Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1148 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCGTTCTCCTTCACAATCGCGTGGTTTGATCTTCAGCTCTGTTTCACCAATGACGCCAACGATGAATTTAAAGCCTGCGGTGTGTATTACAACTGGGGAAATTTGGTTAACATCTCATATCCGTTCTGGGGGAATGAGCGGAGGGAATTTTGCGGTCGGCGAGAATTTGAACTCAATTGCAAAGACAACAAAACCACAACGATTCAAATCAATTCTATCGAATATAACGTTCTGAAAATCAACCAATCGGATAATAGAATGACGATCGCAAGATCAGATCTCTTCGACGATTACTGTCCTAAAAATCAAATCGAAACGGCGACGTTGGATCATAGTCTGTTCAAGTATTCTTCGAACGATCTAAATCTGGGGGTGTGGTATGATTGCCCGCCGCAACAGGGGATTCCGGAGGAGTTCATGTTTTCGTGTGGTTGGAACGGGGAACGAAGTGGAAGAGCGAATTATGCTTTGGAGAAGAAGGATGCGATGAATTGGAGTAAAAATATTAGCGGGTGTAAGATGAACATGGAAGTGACGATTACGATGGAGGTATTGAAAGAAGGAGAAAAGAACAGAACAATGGTGGTGGAAAAGGGAATGAAAGAAGGGTTTGAAGTGGAATACGGGGATTTCTACGCCATAGCTTGCGACGGATGCAAGGAATCTGGTGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTTCTGTGCATTTGTGGGAGTGGAGATGTACATCCTTACGTTTGCAAAGGAGCCCCCCCTCCTGGAGGACTGTATGTACATGAATGGAAGCAGGCCACCCTAGGATTTCCATATAAAAATGGTAGAAGGAAGCCGGACATTATTATAGGAGCAACAACTTCAGCCGGCTTCATTTTAATAATCTCCATTATCATCTTCATCTACTCCAAGAGAAAAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAGGCCAAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAACCCCAATTCCAATGACAGTGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATTGTGGGTTTACATTGTATTCAGACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGCAATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCATTGAGCATCCCCAACCTTCTTCTTCCTCTTCATCCAATTGA 1986 42.85 MKTSVPLFLFSFSFTIAWFDLQLCFTNDANDEFKACGVYYNWGNLVNISYPFWGNERREFCGRREFELNCKDNKTTTIQINSIEYNVLKINQSDNRMTIARSDLFDDYCPKNQIETATLDHSLFKYSSNDLNLGVWYDCPPQQGIPEEFMFSCGWNGERSGRANYALEKKDAMNWSKNISGCKMNMEVTITMEVLKEGEKNRTMVVEKGMKEGFEVEYGDFYAIACDGCKESGGACGGNATQEFLCICGSGDVHPYVCKGAPPPGGLYVHEWKQATLGFPYKNGRRKPDIIIGATTSAGFILIISIIIFIYSKRKRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDSDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTIEHPQPSSSSSSN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25689935 25695814 + ClG42_04g0114800.10 Clacu04g1148 247545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1148 661 ProSiteProfiles Protein kinase domain profile. 348 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1148 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1148 661 MobiDBLite consensus disorder prediction 636 661 - -
Clacu04g1148 661 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Clacu04g1148 661 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
Clacu04g1148 661 FunFam S-receptor-like serine/threonine-protein kinase 315 423 - -
Clacu04g1148 661 Pfam Wall-associated receptor kinase galacturonan-binding 43 101 IPR025287 GO:0030247(InterPro)
Clacu04g1148 661 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 646 IPR045874 GO:0004672(InterPro)
Clacu04g1148 661 SUPERFAMILY Protein kinase-like (PK-like) 336 655 IPR011009 -
Clacu04g1148 661 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Clacu04g1148 661 FunFam PR5-like receptor kinase 424 640 - -
Clacu04g1148 661 SMART serkin_6 348 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1148 661 Pfam Wall-associated receptor kinase C-terminal 169 250 IPR032872 -
Clacu04g1148 661 Pfam Protein tyrosine and serine/threonine kinase 350 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1148 Clacu-Chr4:25689935 Clacu04g1153 Clacu-Chr4:25709880 0.00E+00 dispersed
Clacu11g1082 Clacu-Chr11:13521793 Clacu04g1148 Clacu-Chr4:25689935 6.00E-29 dispersed
Clacu04g1146 Clacu-Chr4:25681618 Clacu04g1148 Clacu-Chr4:25689935 1.90E-117 proximal
Clacu04g1148 Clacu-Chr4:25689935 Clacu04g1150 Clacu-Chr4:25700945 1.70E-29 proximal
Clacu04g1148 Clacu-Chr4:25689935 Clacu04g1149 Clacu-Chr4:25696703 3.90E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73516 PF07714 PK_Tyr_Ser-Thr 3.00E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1148 - - - 0.0