Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1149 ATGGATTTCAAGAGAACCCCTTTTCTTCTTATCATCATCTTCATTATCTTAACTCCCCAAACTCTGTCTTCAGACCAAAACTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCCAATATAAGCTACCCTTTTTGGATAGCTACTTCACACAGCCCCTTCTGTGGATTACCAAGCTTCGATATTGCCTGCAAAGATGAAAACCCAATTATCAGAATTTCAGAAGATGATTATATTATCAGAGACATTTTCTACAAAAACCATTCTTTTCTTTTGAAAAATGCTGCGGTTGACGATGAGAACTGCACAACTCCTCTTCATAATTTCAGCCTCCACGGAACCCCCTTCAATTACAGTTCAGTTCCTTATAATTTCTTCTTCTTCTACAGCTGTACTTCCCTTCCTTCCAATTATAGCTTCCCAATTAATTGTTCTAGCACAAGCAAACTCAATTCTTTTGCTGCTTTTAATGATGGATCCTTGGAGTCCATGAACTCAGCTTACCATTCTTGTCAATCCTCGGTTAAGGTGCCTGTGCACCTCAGTAATAACGAGGAAAATAGTTTTCCTGGGTTGTACAGGAAGAGTTACTCTGATGTCTTGAAGAACGGTTTCAGTTTAAATTGGAGGAGTGCCCAAAATTGTAGCAACTGTGAGACAAGTGGTGGCCGATGTGGGATCAAAAGCAACAAGTTTGTTTGCTTTTGTTCTGATGGATCTCATCTCCAAACCTGCAAAGAGGGAAAACTTGATATATGGAAAAAGGCATTAATAGGTGCATCTCCTTTGGGAATTACCATCATTCTGATAATCTCTGTTATCATCATCTCCATCTACTACACAAGAAAAAGCTTATCAAACAAAGACAAAATTGAGGAAAGTATAAGGAGTTATTCCACACAAACACCCAAGAGATATAGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGATGGGCGCAATGTAGCTGTGAAACTTTTGAATGAGTCCAGTGAAAATGGCCAAGATTTTATGAACGAGGTTGTTAGCATCACCAGAACTTCACATGTAAATATAGCTTCACTCTTAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTGATTTATGAATATATGCCTAGAGGGTCATTGGACAAGTATATATCACACCAAGGGCCACAGAGAAACAATGTTGAGTTGGATTGGAACACACTTTATAGCATCATTATTGGCGTGGCACGAGGCTTAGAGTACTTGCATCGTGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCGCACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGACAAAGAAAGTCATGTGTCAATGACAGGCGTAAAAGGGACGACAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTACAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATGACAATGATGGAGTGGAGCAGAGGAGTGAAGAGTACTTTCCTGATTGGATATATAAAGATCTTACACAAAGTGAAATAGATGGAGGGTGTTGGTGGGGAAGCACGGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGCTGCATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGTGATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAAATTGTTGGAACCTCCAGCCATTGAGCAGCCCCAACCTTCTTCCTCTTCATCCAACTGGATTTCTAATGATAGTTTGATATTCTAG 1908 40.72 MDFKRTPFLLIIIFIILTPQTLSSDQNFEACAPKSCGKGPNISYPFWIATSHSPFCGLPSFDIACKDENPIIRISEDDYIIRDIFYKNHSFLLKNAAVDDENCTTPLHNFSLHGTPFNYSSVPYNFFFFYSCTSLPSNYSFPINCSSTSKLNSFAAFNDGSLESMNSAYHSCQSSVKVPVHLSNNEENSFPGLYRKSYSDVLKNGFSLNWRSAQNCSNCETSGGRCGIKSNKFVCFCSDGSHLQTCKEGKLDIWKKALIGASPLGITIILIISVIIISIYYTRKSLSNKDKIEESIRSYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSTVYKGKLPDGRNVAVKLLNESSENGQDFMNEVVSITRTSHVNIASLLGFCYERKKRALIYEYMPRGSLDKYISHQGPQRNNVELDWNTLYSIIIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCKDKESHVSMTGVKGTTGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDNDGVEQRSEEYFPDWIYKDLTQSEIDGGCWWGSTEEEEEMARKMIIVGLHCIQTLPDDRPSMTDVVVMLEGSVDGLQIPPKPKLLEPPAIEQPQPSSSSSNWISNDSLIF 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25696703 25699050 + ClG42_04g0114900.10 Clacu04g1149 247546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1149 635 FunFam serine/threonine-protein kinase PBS1-like 285 391 - -
Clacu04g1149 635 Pfam Protein tyrosine and serine/threonine kinase 319 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1149 635 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1149 635 SMART serkin_6 317 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1149 635 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247(InterPro)
Clacu04g1149 635 SUPERFAMILY Protein kinase-like (PK-like) 292 594 IPR011009 -
Clacu04g1149 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1149 635 PANTHER RUST RESISTANCE KINASE LR10-RELATED 206 613 IPR045874 GO:0004672(InterPro)
Clacu04g1149 635 FunFam PR5-like receptor kinase 392 606 - -
Clacu04g1149 635 Pfam Wall-associated receptor kinase C-terminal 153 240 IPR032872 -
Clacu04g1149 635 MobiDBLite consensus disorder prediction 616 635 - -
Clacu04g1149 635 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Clacu04g1149 635 MobiDBLite consensus disorder prediction 603 635 - -
Clacu04g1149 635 Gene3D Phosphorylase Kinase; domain 1 289 391 - -
Clacu04g1149 635 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1149 Clacu-Chr4:25696703 Clacu04g1153 Clacu-Chr4:25709880 8.60E-187 dispersed
Clacu04g1147 Clacu-Chr4:25686259 Clacu04g1149 Clacu-Chr4:25696703 2.50E-157 proximal
Clacu04g1148 Clacu-Chr4:25689935 Clacu04g1149 Clacu-Chr4:25696703 3.90E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73517 PF00069 Pkinase 1.50E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1149 - - - 0.0