Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1152 ATGAATGAAGTTGTTAGCATCACCAAAACATCGCATGTAAACATAGCCACCCTCTTGGGATTTTGCTATGAACGAAGTACAAGGGCTTTAGTTTATGAATATATGTCTAATGGGTCATTGGACAAGTATATATTTCATAGAGGGCTACAGATCAAAAATGGTGTGGAGTTGAGTTTGAGCACACTCTATGGCATTGTTATTGGTGTGGGTCGAGGCTTAGAGTATTTGCATTGCCACTGCAACACAAAGATCTTGCATTTTGACATCAAACCAGACAACATTCTTTTGGACAATAATTTCTGCCCCAAGATCTCAGACTTTGGACTTGCAAAGCAATGCATGGCCAGAGAGAGTCATGTGTCAATGACAGGTATGAAAGGGACGGTAGGATTCATGGCACCTGAAGTAATATTTAGAAATCTTGGCAAAGTTTCCCACAAGTCTGATGTTTATAGTTATGGAATGTTGGTTCTTGAGATGTTGGGTGAAAAGAAGTGTCCCAATGAAAGAGTGGAGCAGAGCAGTGAAGGGTACTTTCCTGATTGGATATATAACAATCTTACACGACATGAAATAGATGAAGGTTCTAATTGCTGGGGCAACACAGAAGAGGAAAAACAAATGGCAAGAAAAATGATAATTGTGGGGTTGCATTGCATTCAGACTTCGCCCCATGACAGGCCGTCGATGACCCATGTGGTTGCAATGTTAGAAGGCAGTATTGATGGCTTACAAATTCCACCAAAACCCAACTTGTATGGACCTCCTGCGACTGATCTACTCCAAGCTACTGCTTCTTCTTCTTCATCCAACTCGTACTAA 822 41.24 MNEVVSITKTSHVNIATLLGFCYERSTRALVYEYMSNGSLDKYIFHRGLQIKNGVELSLSTLYGIVIGVGRGLEYLHCHCNTKILHFDIKPDNILLDNNFCPKISDFGLAKQCMARESHVSMTGMKGTVGFMAPEVIFRNLGKVSHKSDVYSYGMLVLEMLGEKKCPNERVEQSSEGYFPDWIYNNLTRHEIDEGSNCWGNTEEEKQMARKMIIVGLHCIQTSPHDRPSMTHVVAMLEGSIDGLQIPPKPNLYGPPATDLLQATASSSSSNSY 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25706835 25707656 + ClG42_04g0115200.10 Clacu04g1152 247549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1152 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1152 273 FunFam PR5-like receptor kinase 35 249 - -
Clacu04g1152 273 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Clacu04g1152 273 SMART serkin_6 1 237 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1152 273 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1152 273 SUPERFAMILY Protein kinase-like (PK-like) 1 238 IPR011009 -
Clacu04g1152 273 Gene3D Transferase(Phosphotransferase) domain 1 36 243 - -
Clacu04g1152 273 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 256 IPR045874 GO:0004672(InterPro)
Clacu04g1152 273 PIRSF ILK 1 245 - -
Clacu04g1152 273 Pfam Protein kinase domain 2 235 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1152 273 MobiDBLite consensus disorder prediction 247 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1152 Clacu-Chr4:25706835 Clacu01g0667 Clacu-Chr1:7147606 7.50E-47 dispersed
Clacu04g1152 Clacu-Chr4:25706835 Clacu04g1153 Clacu-Chr4:25709880 4.00E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73518 PF00069 Pkinase 3.60E-38 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1152 - - - 0.0