Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1153 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCTTTCTTCTTCACAATCCTGTTGTTTGATCTTCAGCTCTGTTTCGGCGATGTCGCCAGCGAGGAATTTAAAGCTTGCGGCGTCAATTACAACTGCGGAGATTTGGTTAACATCTCATATCCGTTTTGGGGGAATAAGCGACAGGAGTTTTGTGGTCGGCGAGAATTTGGACTGAATTGCAAAGACAACAAAACCACCACGATTCAAATCAATTCCATGGAGTATAACGTCGTGAACATCAGCCAATTGGATCATAGAATGACGATCGCAAGATCAGACTTGTACGATGATTACTGCCCTAACAATCAAATCGAAGCGGCGACGTTGGATTATAGTCCATTCACGTATTCTTCAAATGATCTGAATCTGTCTGTGTGGTACGATTGTCCGGCGCTACAGGGGATTCCGCGGGATTTCACATTTGAGTGCGGATCAGAAGGGGAAAAAAGAGGGAGAGCGAATTATGCTTTAGAAGAGAGGGCGATGAATTGGAGTTCATATATGGGAGATTGTAGAATGAAAATCGAAGTGACGATTATGATGGATGTATTGAAAGAAGGGAAAATGAACAGAACGATGGTGGTGGAAAGGGGAGTGAAAGAAGGGTTTGAAGTGGAATACGGTGATTATCATACGTTAGCGTGTGAGGGATGCAAGGAATACGGCGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTTCGGTGCATCTGTGGAAATGGTGATGCACATCTTTACGTTTGCACGTCTCCGCCTTCATCTGGAGCACGATATGCAAATGTTAGATGGAAGCGGAAGCTGGTCGTTGCAGGAACAATATCTTCGGCCGGCTTCATTTTAATAATCTCTATTATCATCTTCATCTACTCCAAGAGAATAAGAATCTCAAACAAAGACAAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAATTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATTGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCTTAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTGCATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAACATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTTGCCAAGCAATGCAGGCCAAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATTCCAATGACAGTGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATTGTGGGTTTACATTGTATTCAGACATTGCCTGATGACAGGCCGTCGATGACCGATGTGGTTGCTATGTTGGAAAGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCTACGACTGATCTCCTCCAAGCTGCTGCTTCTTCTTCATCGAACTCATACTAA 1953 42.81 MKTSVPLFLFSFFFTILLFDLQLCFGDVASEEFKACGVNYNCGDLVNISYPFWGNKRQEFCGRREFGLNCKDNKTTTIQINSMEYNVVNISQLDHRMTIARSDLYDDYCPNNQIEAATLDYSPFTYSSNDLNLSVWYDCPALQGIPRDFTFECGSEGEKRGRANYALEERAMNWSSYMGDCRMKIEVTIMMDVLKEGKMNRTMVVERGVKEGFEVEYGDYHTLACEGCKEYGGACGGNATQEFRCICGNGDAHLYVCTSPPSSGARYANVRWKRKLVVAGTISSAGFILIISIIIFIYSKRIRISNKDKIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLLGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHNILLDDDFCPKISDFGLAKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDSDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLHCIQTLPDDRPSMTDVVAMLESSVDGLQIPPKPNLFGPPTTDLLQAAASSSSNSY 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25709880 25715033 + ClG42_04g0115300.10 Clacu04g1153 247550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1153 650 ProSiteProfiles Protein kinase domain profile. 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1153 650 Gene3D Phosphorylase Kinase; domain 1 307 410 - -
Clacu04g1153 650 FunFam PR5-like receptor kinase 411 627 - -
Clacu04g1153 650 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Clacu04g1153 650 Pfam Wall-associated receptor kinase galacturonan-binding 41 101 IPR025287 GO:0030247(InterPro)
Clacu04g1153 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1153 650 FunFam S-receptor-like serine/threonine-protein kinase 304 410 - -
Clacu04g1153 650 Pfam Protein tyrosine and serine/threonine kinase 337 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1153 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 632 IPR045874 GO:0004672(InterPro)
Clacu04g1153 650 SUPERFAMILY Protein kinase-like (PK-like) 323 636 IPR011009 -
Clacu04g1153 650 Pfam Wall-associated receptor kinase C-terminal 164 249 IPR032872 -
Clacu04g1153 650 SMART serkin_6 335 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1153 650 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1146 Clacu-Chr4:25681618 Clacu04g1153 Clacu-Chr4:25709880 1.90E-149 dispersed
Clacu04g1148 Clacu-Chr4:25689935 Clacu04g1153 Clacu-Chr4:25709880 0.00E+00 dispersed
Clacu04g1149 Clacu-Chr4:25696703 Clacu04g1153 Clacu-Chr4:25709880 8.60E-187 dispersed
Clacu04g1153 Clacu-Chr4:25709880 Clacu05g1009 Clacu-Chr5:8924534 9.70E-61 dispersed
Clacu07g1490 Clacu-Chr7:29504766 Clacu04g1153 Clacu-Chr4:25709880 2.50E-21 dispersed
Clacu04g1152 Clacu-Chr4:25706835 Clacu04g1153 Clacu-Chr4:25709880 4.00E-117 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73519 PF07714 PK_Tyr_Ser-Thr 2.90E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1153 - - - 0.0