Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1156 ATGAAGGAACTTGAGAAAGGAGAAAATTACATGGCTGTTCCTCTCTTCTCTTATCAAGAACTTGTACAAGCTACAAACAAATTCAACCCAGCCAACCAACTTGGAGATGGCGGCTTTGGCACTGTCTACTCCGGCAAACTACTAGATGGGCGTGAGGTTGCAGTTAAACGATTGTTTGAAAATAACTACAGAAAAGTTGAGCATTTCCTAAATGAAGTCGAGATCCTTACTCGTTTGCACCACCCACATCTTGTCACCCTTTACGGATGCACCTCTCGACGATCTCGTGAACTCTTGTTGGTTTATGAGTTTGTACCGAACGGTACGGTCGCCGATCATCTTCACGGCATCCAAGCAAGACCAGGTGAGCTTCCATGGGTTACAAGGTTGAAGATTGCCATAGAGACAGCAAGTTCTCTGGCTTTTCTCCATGCTTCGAAAACCATCCACCGTGATGTTAAAACCACCAACATTCTCGTTGACAACAATTTCGACGTCAAAGTCGCTGATTTTGGACTGTCTCGCCTTTTTCCTACGCAAGCTACGCATGTTTCAACTGCTCCACAAGGAACTCCAGGATATGTTGATCCAGAGTATTACGAATGTTATCAACTTACGAATAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCAGCAGTTGATATCACAAGGCACAGACATGAGATTAACCTGTTGACGATGGCGATCAACAAGATCCAAAATGACGAATTACACGACTTTGTAGATCCATATCTTGGATTCAAAACAGATGAAAGGATCAGAGACATGATATGTGGAGTTGCAGAGTTGGCATTTCAATGCCTGCAAAGTGTGAGGGATACAAGACCCTCAATGTTTGAGGCTCTAGAAATTCTGAAGAATATAGAGTAG 915 43.39 MKELEKGENYMAVPLFSYQELVQATNKFNPANQLGDGGFGTVYSGKLLDGREVAVKRLFENNYRKVEHFLNEVEILTRLHHPHLVTLYGCTSRRSRELLLVYEFVPNGTVADHLHGIQARPGELPWVTRLKIAIETASSLAFLHASKTIHRDVKTTNILVDNNFDVKVADFGLSRLFPTQATHVSTAPQGTPGYVDPEYYECYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLLTMAINKIQNDELHDFVDPYLGFKTDERIRDMICGVAELAFQCLQSVRDTRPSMFEALEILKNIE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25718342 25719358 + ClG42_04g0115600.10 Clacu04g1156 247553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1156 304 Gene3D Transferase(Phosphotransferase) domain 1 105 304 - -
Clacu04g1156 304 Pfam Protein kinase domain 31 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1156 304 SMART serkin_6 28 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1156 304 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 304 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Clacu04g1156 304 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
Clacu04g1156 304 PIRSF ILK 16 304 - -
Clacu04g1156 304 FunFam Wall-associated receptor kinase-like 20 105 304 - -
Clacu04g1156 304 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524(InterPro)
Clacu04g1156 304 Gene3D Phosphorylase Kinase; domain 1 2 104 - -
Clacu04g1156 304 ProSiteProfiles Protein kinase domain profile. 28 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1156 Clacu-Chr4:25718342 Clacu07g1489 Clacu-Chr7:29493896 3.70E-119 dispersed
Clacu04g1147 Clacu-Chr4:25686259 Clacu04g1156 Clacu-Chr4:25718342 5.20E-155 proximal
Clacu04g1156 Clacu-Chr4:25718342 Clacu05g2448 Clacu-Chr5:32642281 1.10E-120 wgd
Clacu04g1156 Clacu-Chr4:25718342 Clacu06g1572 Clacu-Chr6:26586358 1.50E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73520 PF00069 Pkinase 7.20E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1156 - - - 0.0