Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1168 ATGCTTTCGATGGGGCTTTTGTCTTCTCTCTGCGTCTGCTTGCAGAAAAGACTTAAAGCAGCTAATTCTGCGAGTGACGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTAAGTTCTTTGCAAATTGCAACTAATTTCTTTTCCGAGGCGAATAAACTCGGCAATGGAGGGTTTGGGCCCGTCTACAAGGGATTGATGCCAAATGGCCAACAAGTTGCAGTCAAGAAGCTCTCGTTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTGTATGAGTACTTACCAAACAGAAGTCTTGATTACTTTATTTTCGATAAAAAGAAGTCTCCATCCTTGGATTGGACAACACGGTTTCATATAATTACAGGTATAGCGAGAGGTCTTCTCTACTTACATGAAGAGGCTCCTTCAAGAATTATACATAGAGATGTCAAAGCTAGTAACATATTATTAGATGAGCAATTGAATCCGAAAATCTCAGATTTTGGATTAGCTCGACTTTTTCCTGGGGATGACACACATTTGAATACATTTAAGATTGCCGGCACTCATGGCTATATGGCTCCTGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGGATCCTGGTATTAGAGATTGTTAGTGGAAGAAAAAATTATGACGACCGACTTGGTGCACAACAAGTGGACCTCTTGGGATATGCATGGTTGCTTTACCAAGAAGGAAGGATTTTAGAATTAGCTGATAAAAGCTTAACAAAATGCAATGTAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCAAGTGTCACAGATAGGCCTGACATGAATACCATTCATCTCATGCTTTCTAGTGATTCGTTCACGTTGCCGCGACCTGGAAGACCTGGAATTCATGGTCGAGCAGCACGTCGAACAACTACCTCTACTTCGAATTTCACCAAGACAAATACTAGTACACAAACTGGCGTTACTAGAGCTTCAACTAGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATTTCTGTTTCTTCTATTGATGAAGGCAGGTGA 1173 40.24 MLSMGLLSSLCVCLQKRLKAANSASDDEADDEDVSTDIFFELSSLQIATNFFSEANKLGNGGFGPVYKGLMPNGQQVAVKKLSLDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFDKKKSPSLDWTTRFHIITGIARGLLYLHEEAPSRIIHRDVKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNYDDRLGAQQVDLLGYAWLLYQEGRILELADKSLTKCNVDEAAMCIQLGLLCCQASVTDRPDMNTIHLMLSSDSFTLPRPGRPGIHGRAARRTTTSTSNFTKTNTSTQTGVTRASTSSSLVEDYSRNSISVSSIDEGR 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25865441 25869683 + ClG42_04g0116800.10 Clacu04g1168 247565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1168 390 MobiDBLite consensus disorder prediction 333 370 - -
Clacu04g1168 390 CDD STKc_IRAK 58 322 - -
Clacu04g1168 390 MobiDBLite consensus disorder prediction 342 370 - -
Clacu04g1168 390 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Clacu04g1168 390 SUPERFAMILY Protein kinase-like (PK-like) 40 338 IPR011009 -
Clacu04g1168 390 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 336 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu04g1168 390 SMART serkin_6 52 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1168 390 FunFam Cysteine-rich receptor-like protein kinase 2 16 127 - -
Clacu04g1168 390 Pfam Protein tyrosine and serine/threonine kinase 55 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1168 390 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Clacu04g1168 390 Gene3D Phosphorylase Kinase; domain 1 12 127 - -
Clacu04g1168 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1168 390 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1168 Clacu-Chr4:25865441 Clacu05g1668 Clacu-Chr5:25126069 2.40E-94 dispersed
Clacu04g1168 Clacu-Chr4:25865441 Clacu02g0155 Clacu-Chr2:1544760 1.30E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73521 PF07714 PK_Tyr_Ser-Thr 7.80E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1168 - - - 0.0