Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1171 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACGTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGTTGCTGATGACAAATTGAAGGCAAAGGAAATAAAAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 822 39.17 MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDVHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSVADDKLKAKEIKEGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25892325 25893944 + ClG42_04g0117100.10 Clacu04g1171 247568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1171 273 CDD bHLH_AtBPE_like 146 231 - -
Clacu04g1171 273 FunFam transcription factor BEE 3-like 153 224 - -
Clacu04g1171 273 Gene3D - 153 224 IPR036638 GO:0046983(InterPro)
Clacu04g1171 273 SMART finulus 162 212 IPR011598 GO:0046983(InterPro)
Clacu04g1171 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 223 IPR036638 GO:0046983(InterPro)
Clacu04g1171 273 MobiDBLite consensus disorder prediction 101 163 - -
Clacu04g1171 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983(InterPro)
Clacu04g1171 273 MobiDBLite consensus disorder prediction 130 163 - -
Clacu04g1171 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983(InterPro)
Clacu04g1171 273 MobiDBLite consensus disorder prediction 105 126 - -
Clacu04g1171 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 98 232 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1171 Clacu-Chr4:25892325 Clacu08g0643 Clacu-Chr8:15077993 1.40E-37 dispersed
Clacu04g1171 Clacu-Chr4:25892325 Clacu06g1579 Clacu-Chr6:26672764 2.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47540 PF00010 HLH 5.30E-05 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1171 - - - 0.0