Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1190 ATGGGGATCCAGCAATGGCGGCATTTGAAGCGCGGGGAAAGAGATTGGGCCTGGAGAGTTGTGTCTTTGGAGATTGATGGGTGTTGCCTACTGTGGGTTTCCAAATCCACCATTGATGAAGAGCTTGCTTGCTATGTGCTTGCTATGGCCAAGCCTCGCAAGCCCAAGAACACCGACGACGCGAAGCCACCTGACAACTCCGGAGCTGTAGTTCGTCACCAGAAGCTTTGCCTTTCCATCGACATTGACAAACGTCGCGTTTATGGGTTCACCGAGTTGGAAATTGCGGTTCCTGATATTGGCATAGTTGGGTTGCACGCGGAGAATCTTGGGATTGTGAGTGTTTCAGTGGATGGTGACCCTACTGAATTCGAGTATTATCCGCGGCCTCAACATGTGGAAAGTGAGAAGAGTTTTAAAGCAGTGTCGTCGCCGAGCTCTGCTGCAGATGCTGCGGGGTCAATTTATTTGTCTTCAATCGAGAAAGAATTGGTTCCTAATTTGTTGATAAACTGCTGCAAGGCTTTCAAGAGCGGAAGTGAGCAGCAAGACCAGCCATTTCTGGAGAATGGAGTGCAACCTGCGGAGGAGGACAAGCAGAATATAAGGCTGGTTCGTATTGATTACTGGGTAGAGAAATCAGAGGTAGGTATTCACTTCTATAACCACATGGCTCACACTGACAACCAAATAAGGCGTGCAAGGTGCTGGTTCCCTTGTATGGATGATGGCCTACAACGATGCAAGTATGACCTCGAGTTTACTGTCTCTCAAAATCTTGTGGCTGTCAGTAATGGAATTCTGTTGTACCAGGTCTTGAGCAAGGACAATCCTCCCCGCAAAACTTATGTTTATCGAGTAGACATCCCCGTCAATGCACATTGGATATCACTTGCTGTTGGACCGTTTGAAATCCTTGCTGATCATCAAAATGGACTTATATCACACATGTGCTCGCCCGTTAACTCTTTAAAGCTTAAGCATACGGTGGAATTTTTTCATAGTGCATTCAGCTGCTATAAGGATTACCTTTCGGTGGACTTCCCATTTGGGTCATACAAACAAATCTTCATAGAGCCGGAGATTGTGGTATCATCAGCATGTTTGGGAGTTTCCATGTGTATATTTAGTTCTCATCTTTTGTTTGATGAGAAAATCATCGATCAGACCATAGATACTAGGATTAAACTTGCTTATGCTCTGGCAAGACAGTGGTTTGGCATTTATATTACGCCTGAAGCCCCAAATGATGAGTGGTTGTTGGATGGTCTTGCTGGTTTCTTGACTGATTTATTTATCAAGAAGAACTTGGGAAATAATGAGGCACGCTACCAGAGATACAAGGCCAATTGTGCTGTTTGTAGAGCAGATGATAGTGGTTTGACCACCTTGTGTTCCTCTTCTGCTTGCAAAGATTTGTATGGGACCCAACATATTGGTATATACGGAAAAATAAGATCATGGAAGTCTGTGGCAATCCTTCAAATGTTGGAAAAGCAGATGGGGCCTGAGTCTTTCCGCAAGATTCTACAAAATATTGTTTCTCGTGCTAAAGATACTACCTCTACGTCACACTCACTTAGCACGAAAGAGTTTCGTCAATTGGCCAATAAGATTGGAAACCTTGAGCGGCCATTTCTCAAAGAGTTCTTTCCTCGGTGGGTCGAATCATGTGGTTGTCCCCTGCTGAGGATGGGGTTTTCGTACAACAAGCGGAAAAATATGGTTGAGATGGCGGTGTCACGGGAATGCACAGTTACACCAGCCACAAGTGTAGAAAATCGGGACAGTGATGCTGGATGGCCTGGTATGATGAGTATTAGGATTTATGAGCTTGATGGTGTGTTTGATCATCCAGTTCTTCCAATGACTGGAGAGTCCTGGCAGCTACTAGAAATACAATGCCACTCCAAACTTGCTGCTAGGCGCCTCCAGAAAACTAAAAAGGGATCGAAACCTGATGGTTCTGATGACAATGCTGATATACCTGCACTCGACGTTCGCTCTAGTGTGGAATCTCCTTTGTTATGGTTGAGAGCAGACCCTGAGATGGAATACCTTGCTGAAATTCATTTTCATCAACCTGTTCAGATGTGGATCAATCAATTGGAGAAGGACAAGGATGTCATTGCTCAAGCACAAGCAATCACGACATTAGAGATGTTGCCTCAACCATCTTTTTCTGTTGTTAATGCTCTTAACAATTTCCTCAGAGACCCCAAGGCCTTCTGGAGAGTAAGAATTGAAGCAGCATTGGCAATGGCCAAAACAGCCTCAGAGGATACTGATTGGGCTGGTTTGCTTAATTTGATTAAATTTTTCAAAAGTCAGAGGTTTGATGCAGATACCGGACTCCCCAAGCCAAATGAATTTCGTGATTTTCCTGAGTATTTTGTTCTTGAGGCCATTCCTCATGCTGTTGCTATGGTCAGGGCCACCGACCAAAAAAGCCCTAGAGAAGCTGTTGAGTTTGTTTTGCAACTTCTGAAGTACAACGACAACAATGGGAATCCTTACTCAGATGTTTTCTGGTTGGCTGCACTAGTCCAGTCAGTTGGTGAGCTTGAATTTGGGCAACAGAGCATTCTGTTTTTAGCATCGCTTCTTAAAAGGATTGATAGACTTCTGCAGTTTGACAGGCTGATGCCTAGCTATAACGGGATCTTGACTATTAGCTGCATCAGAACCTTGACCCAGATTGCACTGAAACTATCTGGACTTCTCTCTCTTGATCGTATCTTTGAACTGATAAGACCTTTTCGAGATTTTAAGTCCATTTGGCAAGTTCGAATTGAGGCAACTCGAGCACTTCTCGATCTTGAGTACCACTGCAATGGAATTGATGCAGCATTGTTATTGTTTATTAAATATCTAGAAGAAGAGAATTCCTTGCGAGGCCAAGTGAAGCTGGGGGTCCATGTTATGCGTTTATGTCAGATAATGAGAAGATCTGATTCAAATGATGTAGTCAATAATGACACTCTTGTTGCTTTGCTCCTCCTACTTGAAGGCCACATGGCGTTTAACAATGTCCATCTTCGTCACTACTTGTTCTGTATTTTACAAGTCCTTGCAGGACGGCCCCCAACACTTTATGGAGTTCCTAGAGAATATAAAACATTGCATATGGGCGACGTGGGAACTTGCAGTGAACAGAAGAGGATGTTAACTTCTCTCATCCCTGAATTCAATCCACCAGAGCCATCATCAGTCTCTGCAGCGGCGCCTATGCCATGTATCCCAGCAACTCTGTCATCAGAACCACTTCATACTTCCAAACTGAGGCCTGACAGCTTAGCAATTCCCGAGCTTTCCAAGGAAGGAGGAACAATTGCAGAGGTTCCTAAGCAAGATATGGCAATAGCAGAAGCTCCCAGAGAGGCAGCTTCTGTTTCCAATAGCCATGAGAGGAAGTTGCCAGTTGTTAAGATTAAAGTCAGATCATCTGCTGCTACAAGTAGAGCAGATGCGGATAATCTAACCACTGAAAGATCTCATGCTGCACCTCGTGAAACGGATGTTGGTCCTACTAGTTCTGTTTCTGTTGATGCACCCCAAAGAAATATTGCTGAGGCTACGAGTATCAGCAACCATATTCTGGAGGAGGTTAACTCCTGTCACGATCGCGGGTCTCACATGACAGCCAGCATTGGCAGTGCAAAACTTGCGAGTTATGGTGATGAACTTGAGAAGGAGTTCCAGTGCACTGCTGATTCCAGTAGGGCTTTTGGACATTTTCAGCTAGAAGATCCTTCGTCATCGAGCATCATACAAGATAACAATATTGATGCTGATGCACAGAAGTATGCAAGTCTTCAGACACTTTCTTTACCACAGCATGATCATGGGTTAGCCTCTTTGCACTCTCGCCATGGGAAAAAGGAAAAGAAGAAAGATAAAGAAAAGAAACGTAAACGAGAAAGTCACAAAGAACATCGCAACGATCCTGAATACATCGAGCGCAAACGATTGAAGAAAGAGAAGAAACAAAAAGAAAAAGAGATGGCAAAGCTATTGAATGAGGAGGTGAAGCCACTGCCTCTAGCAATGCCTCGTATAAAAGAACCACCAACCAAGTCAACACCTGTGCAGCTGGAAACAAAAGAACCTAGCGGATCTAGATTAATTGTAGGAGTTCATAGTAAGCCCGAGGCATCAGAAGGTACTACTTCTGCTGCCCCCAAACTTAGAATTAAATTCAAAAATCGGACACTGAACAATTCATAA 4227 44.12 MGIQQWRHLKRGERDWAWRVVSLEIDGCCLLWVSKSTIDEELACYVLAMAKPRKPKNTDDAKPPDNSGAVVRHQKLCLSIDIDKRRVYGFTELEIAVPDIGIVGLHAENLGIVSVSVDGDPTEFEYYPRPQHVESEKSFKAVSSPSSAADAAGSIYLSSIEKELVPNLLINCCKAFKSGSEQQDQPFLENGVQPAEEDKQNIRLVRIDYWVEKSEVGIHFYNHMAHTDNQIRRARCWFPCMDDGLQRCKYDLEFTVSQNLVAVSNGILLYQVLSKDNPPRKTYVYRVDIPVNAHWISLAVGPFEILADHQNGLISHMCSPVNSLKLKHTVEFFHSAFSCYKDYLSVDFPFGSYKQIFIEPEIVVSSACLGVSMCIFSSHLLFDEKIIDQTIDTRIKLAYALARQWFGIYITPEAPNDEWLLDGLAGFLTDLFIKKNLGNNEARYQRYKANCAVCRADDSGLTTLCSSSACKDLYGTQHIGIYGKIRSWKSVAILQMLEKQMGPESFRKILQNIVSRAKDTTSTSHSLSTKEFRQLANKIGNLERPFLKEFFPRWVESCGCPLLRMGFSYNKRKNMVEMAVSRECTVTPATSVENRDSDAGWPGMMSIRIYELDGVFDHPVLPMTGESWQLLEIQCHSKLAARRLQKTKKGSKPDGSDDNADIPALDVRSSVESPLLWLRADPEMEYLAEIHFHQPVQMWINQLEKDKDVIAQAQAITTLEMLPQPSFSVVNALNNFLRDPKAFWRVRIEAALAMAKTASEDTDWAGLLNLIKFFKSQRFDADTGLPKPNEFRDFPEYFVLEAIPHAVAMVRATDQKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLASLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGLLSLDRIFELIRPFRDFKSIWQVRIEATRALLDLEYHCNGIDAALLLFIKYLEEENSLRGQVKLGVHVMRLCQIMRRSDSNDVVNNDTLVALLLLLEGHMAFNNVHLRHYLFCILQVLAGRPPTLYGVPREYKTLHMGDVGTCSEQKRMLTSLIPEFNPPEPSSVSAAAPMPCIPATLSSEPLHTSKLRPDSLAIPELSKEGGTIAEVPKQDMAIAEAPREAASVSNSHERKLPVVKIKVRSSAATSRADADNLTTERSHAAPRETDVGPTSSVSVDAPQRNIAEATSISNHILEEVNSCHDRGSHMTASIGSAKLASYGDELEKEFQCTADSSRAFGHFQLEDPSSSSIIQDNNIDADAQKYASLQTLSLPQHDHGLASLHSRHGKKEKKKDKEKKRKRESHKEHRNDPEYIERKRLKKEKKQKEKEMAKLLNEEVKPLPLAMPRIKEPPTKSTPVQLETKEPSGSRLIVGVHSKPEASEGTTSAAPKLRIKFKNRTLNNS 1408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26083079 26105465 - ClG42_04g0119000.10 Clacu04g1190 247587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 1283 1396 - -
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 1308 1340 - -
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 644 664 - -
Clacu04g1190 1408 SUPERFAMILY ARM repeat 494 1027 IPR016024 -
Clacu04g1190 1408 Pfam Peptidase family M1 domain 332 529 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Clacu04g1190 1408 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 49 1345 IPR037813 GO:0000976(PANTHER)|GO:0003682(PANTHER)|GO:0005669(PANTHER)|GO:0005669(InterPro)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 647 661 - -
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 1172 1186 - -
Clacu04g1190 1408 Coils Coil 1319 1344 - -
Clacu04g1190 1408 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 60 302 IPR042097 -
Clacu04g1190 1408 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 318 564 - -
Clacu04g1190 1408 Gene3D tricorn interacting facor f3 domain 70 301 IPR042097 -
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 1287 1307 - -
Clacu04g1190 1408 MobiDBLite consensus disorder prediction 1147 1186 - -
Clacu04g1190 1408 Gene3D - 691 971 IPR011989 -
Clacu04g1190 1408 Gene3D Neutral Protease Domain 2 307 559 IPR027268 -
Clacu04g1190 1408 CDD M1_like_TAF2 73 555 - -
Clacu04g1190 1408 FunFam Transcription initiation factor TFIID subunit 308 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1190 K03128 - - csv:101210662 2487.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g367 . . . . . . . . Cmo13g01082 . . . . . . Cpe20g00107 . . . . . . . . . . . . . . . Cone2ag0646 . . . Lsi02g00164 Csa01g00648 Chy12g01454 Cme12g01894 . . . Bda14g00912 . Bpe15g00546 Bma03g00887 . . . . Cma13g01041 . Car13g00873 . . . Bhi08g01209 . . Lac10g0216 . . . Cla04g01110 Cam04g1162 Cec01g1673 Cco01g1719 Clacu04g1190 Cmu04g1170 Cre01g1467 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010321 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32