Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1198 ATGCTGCCGTTAGACTCCCCTCTCATCTATCTCACTCTCTCGCAGACACTTTCGCCAGGCCACTCGCCGCCGCTCCCCCCAGACACCGTCGTCTGCCGTCGGTCAGGCCAGCCCGCCGCTCCAGCCACCTCAATTCGCCGGTTGTCGTTCGTGGCTGCCTGCCGTCACGTCCGAGGTCCAGAGAGCCCAATAATTTTATTTAAACGGTCCGAGTTTGTCGGCCCAAATGTGAACGTCCAACTCGACTCACTTATTGAAGTCGTTCAAGTTCGTGGTATCAACTTCTTCAATTTCATTACTTTTATTAGAAATTCTTACGAGAATCATCACTTGGAAGTCAGTGCCATGGTCGTACTGGATGAGAAAGTTCCTTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACGGGTGCGGAAGAATCGGAACTTCAAAATCCAATGAAAGGTGAAGAAGAAGGGGAAGGAGATGCTGAAGGCAATGTATCAGTGAAGAAAGTGGAAAAAGACGAGAAGATGAAGAAGAAGAGGAAGACAAAAATGAAGAGGAAGGACGAGTTGGAGGAGGAAGGACATGAAAATGCTAACGATGACGATGGCGAGGATGGCGTGGAAGGGAAGGTTGAGGAGGATGAGGAGAAAGAGAACGAGGAAAAGAAGTTTAAGACTGTTGGATCAGGAATTATGAGTACTGTTTCATTTGATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAGTTGGGAAAGATATCCTTGGAGCTGCAAGGACAGGATCCGGGAAAACTCTTGCCTTTCTTATACCAGCTGTGGAGCTCCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACGCTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTTAATCTATTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTTGAAGATCTTGTTCGCTTGTCATTTCAGTCAACTCCTATTTATATTGACGTGGATGATGGAAGAACAAAGGTCACCAACGAGGGGTTGCAACAAGGTTACTGTGTTGTGCCTAGTTCAAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGTCCTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGACATTCCCGCCGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTCGGCCGAACAGCTCGAGGCGAAGGTAGCAGAGGAAATGCCCTACTTTTCTTGATGCCTGAAGAGCTTCAATTTCTTCACTATCTAAAGGCAGCAAAAGTTCCCGTCAAAGAGTATGAATTCAGTGATAAGAAACTGGCCAATGTCCAATCTCATCTGGAGAAACTGGTGGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTACAGATCCTATATATTAGCTTACAATTCACATTCTATGAAAGATATTTTCAATGTCCACCGCCTTGATCTCCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATTGACAGCAGTGCTTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAGATTCATTAAGAGCAATCCTTATGGGAGGAAGAATGAGGGAGATGAGAGACAGTTTGTAAGATACTAG 2193 44.23 MLPLDSPLIYLTLSQTLSPGHSPPLPPDTVVCRRSGQPAAPATSIRRLSFVAACRHVRGPESPIILFKRSEFVGPNVNVQLDSLIEVVQVRGINFFNFITFIRNSYENHHLEVSAMVVLDEKVPSSSEVEAMNKRRKRKRPKKNLPSTGAEESELQNPMKGEEEGEGDAEGNVSVKKVEKDEKMKKKRKTKMKRKDELEEEGHENANDDDGEDGVEGKVEEDEEKENEEKKFKTVGSGIMSTVSFDSLDLSEKTLRAIKDMGFEHMTQIQARAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSRGNALLFLMPEELQFLHYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNRFIKSNPYGRKNEGDERQFVRY 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26145036 26150194 - ClG42_04g0119800.10 Clacu04g1198 247595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1198 730 Gene3D - 460 705 IPR027417 -
Clacu04g1198 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 449 IPR014001 -
Clacu04g1198 730 CDD SF2_C_DEAD 464 594 - -
Clacu04g1198 730 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 395 403 IPR000629 -
Clacu04g1198 730 MobiDBLite consensus disorder prediction 708 730 - -
Clacu04g1198 730 FunFam RNA helicase 460 690 - -
Clacu04g1198 730 PANTHER RNA HELICASE 234 630 - GO:0000463(PANTHER)|GO:0005730(PANTHER)
Clacu04g1198 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 599 IPR027417 -
Clacu04g1198 730 SMART DUF4217_3 624 687 IPR025313 -
Clacu04g1198 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 633 IPR001650 -
Clacu04g1198 730 MobiDBLite consensus disorder prediction 156 181 - -
Clacu04g1198 730 MobiDBLite consensus disorder prediction 202 223 - -
Clacu04g1198 730 Pfam Domain of unknown function (DUF4217) 636 685 IPR025313 -
Clacu04g1198 730 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 243 271 IPR014014 GO:0003724(InterPro)
Clacu04g1198 730 SMART helicmild6 503 584 IPR001650 -
Clacu04g1198 730 Coils Coil 181 201 - -
Clacu04g1198 730 Pfam DEAD/DEAH box helicase 267 438 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Clacu04g1198 730 MobiDBLite consensus disorder prediction 124 232 - -
Clacu04g1198 730 MobiDBLite consensus disorder prediction 716 730 - -
Clacu04g1198 730 SMART ultradead3 262 467 IPR014001 -
Clacu04g1198 730 CDD DEADc_DDX18 254 451 IPR044773 GO:0003724(InterPro)|GO:0005524(InterPro)
Clacu04g1198 730 Gene3D - 171 453 IPR027417 -
Clacu04g1198 730 Pfam Helicase conserved C-terminal domain 479 582 IPR001650 -
Clacu04g1198 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 450 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1198 K13179 - - csv:101209673 1011.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1101 Clacu-Chr4:25254160 Clacu04g1198 Clacu-Chr4:26145036 2.30E-282 dispersed
Clacu04g1198 Clacu-Chr4:26145036 Clacu10g0528 Clacu-Chr10:6380652 1.10E-89 dispersed
Clacu10g1010 Clacu-Chr10:21697876 Clacu04g1198 Clacu-Chr4:26145036 8.50E-06 dispersed
Clacu04g1198 Clacu-Chr4:26145036 Clacu01g0296 Clacu-Chr1:2938554 6.70E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51