Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1201 ATGGGTAGTGGTAGAAGAAGGAGGAAGCAACATTTCAGAAGAATTCATGCCTTTCCTTGCGGTAGAGCTTCTTTCAAAGATGAACACTCTTTAATTGGAGGGCCAGGGTTCTCAAGGGTAGTTTACTGTAATGATCCTGATAGTTTTGAGGCCAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAAATCATTGTTTGAGCAATTCAGAAGAGTTGCCAACTTGTACTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCCCTTTCGCCGTATTCGCCGGTCAGCAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGGCAAAGAAGCTCTTGAAGATTGGAGGAGAACCAAACAGGACATGGAGATGAATAACAGGAAGGTGAAAGTACATATTAGAGATGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGATGTAGTTAAAGTGGAGAAAGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCATCAAGTTATGAGGAAGCGATTTGCTACGTCGAGACAATGAATCTTGATGGGGAAACAAATTTGAAACTGAAGAATGCATTAGAAGCAAGCTCAAACTTACACGAGGATTCGAGCTTCCAGAATTTCAAGGCAATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGAAGTATGGAGCTTGAAGAGCAGCAACATCCACTGAGCCCTCAACAGCTTCTTCTTCGAGACTCGAAGCTTCGAAACACTGATTTTATATATGGTGTGGTGATTTTCACAGGTCATGATACAAAGGTTATTCAGAACTCAACAGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGACAAGATTGTGTTCTTACTGTTTGCTGTCTTGGTTTTGATATCAATTGCTGGGTCGATTTTCTTTGGTGTTACGACTAGAGATGATATAGAAAACGGAAGAAGTACGAGATGGTACCTTAGGCCAGATGATACCACAATATATTACAACCCCAAAAATGCTCCAGCTGCAGCAATATTGCAGTTTCTGACTGCTCTTATGCTTTTTAGCTACTTGATTCCCATATCATTGTATGTTTCCATAGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATGAACATATGTACCATGAGGAAACTGATAAGCCAGCTCATGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACCATTCTTTCCGATAAAACGGGGACATTGACTTGCAATTCGATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTACGGGCGAGGTATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCTCAAAATTTAGAGGCCAACAATGCACGTCTTAGCAGCGAAAAACCATTCATTAAGGGGTTCAATTTCAAGGATGAAAGAATAATGGATGGTAACTGGGTGAAGGAGCCTAGAGCCGATGTAATCCAGAAGTTCCTACAGCTTCTGGCCATATGCCATACTGCATTGCCAGAAATTGATGAGGGAACTGGACAAATTTCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTCGGTTTTGAGTTCTATGAAAGGACTCAGACAAGCATTTCATTGCGGGAGTTCGATCCGACCTCGGCCAAAATTGTTGAAAGATCATATCAATTATTGGATGTTTTGGAGTTTAATAGCACAAGAAAGCGGATGTCTGTGATTGTAAGAGATGCAAAGGGACAGCTACTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAACGGAAGTGAGTTTGAAGAACAGACAAAGGTGCACATCAATCAGTACGCCGACGCTGGTTTAAGAACTTTGGTTCTAGCATATCGTGAGCTGAAAGAGGAAGAATTTAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGCACAGATCGCGATGACATAATCGATCAGTTGACAGAAACCATTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATTGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGTGATAAGATGGAAACAGCCATCAACATTGGCTTTGCTTGCAGTTTACTTAGACAAGGAATGAAGCAAATAATTATCAGCTCAGAGACTCCGGAAGGAAAAGCTTTAGACAAAGTTGAAGATGTTCACAAATCCGCAGCTATCAAGGCGTTTAAGGCAAGTGTCACTCAACAAATAACTGATGCGAAAGCATTGCTTACATCCTTGAGCGAAACCCCAGAAGCTTTGGCTTTGATAATTGATGGAAAGTCCCTCACCTATGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCAGTACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCGGATATTGGGATTGGTATTAGCGGTGTCGAAGGGATGCAGGCAGTCATGTCCAGTGACATTGCAATAGCACAGTTTCGATATTTGGAGCGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGGATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGATGTATGCATCATTCTCCGGCCAAGCTGTATACAACGACTGGTTCCTTTCTCTGTATAACGTCTTCTTTACTTCTCTCCCTGTGATCGCATTGGGAGTATTCGACCAAGATGTCTCATCCCGGTACTGTCTCAAGTTCCCACTTCTATACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGTTGGGTGTTCAACGGGCTACTAAGTTCTGTTATCATATTCTTCTTTTGTGTTGGGGCAATGGAACATCAAGCTTTCCGCAACAGCGGAGAGGTGGTCGGGTTGGAAATTCTTGGCGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCAATGTCCATCAGTTACTTCACATATATTCAACATCTCTTCATCTGGGGAAGCATCATTCTTTGGTACTTATTCCTCATGGCATATGGAGCTATAAACCCAACCATATCAACAACAGCATTTCAGGTATTCGTCGAGGCCTGTGCTCCGGCACCGTCATTTTGGATCCTCACACTAGTGGCTTTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCGATCCAAATGCGGTTCTTCCCAATGTATCATCAAATGATTCAATGGATAAAAGCTGACGGGCAGTCGAACGATCCAGAATACTGTCAAGTAGTTAGACAGAGATCACTACGGCACACAACCGTCGGTTACACAGCTCGGTTCGAAGCATCAAAGCATTTTGAAGAAATCCCAGAAATCAAGAACCATTAG 3591 42.11 MGSGRRRRKQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGVTMGKEALEDWRRTKQDMEMNNRKVKVHIRDGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFLLFAVLVLISIAGSIFFGVTTRDDIENGRSTRWYLRPDDTTIYYNPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSAFINQDEHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPQNLEANNARLSSEKPFIKGFNFKDERIMDGNWVKEPRADVIQKFLQLLAICHTALPEIDEGTGQISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSAKIVERSYQLLDVLEFNSTRKRMSVIVRDAKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINQYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSTDRDDIIDQLTETIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPEGKALDKVEDVHKSAAIKAFKASVTQQITDAKALLTSLSETPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGQAVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSVIIFFFCVGAMEHQAFRNSGEVVGLEILGATMYTCVVWVVNCQMAMSISYFTYIQHLFIWGSIILWYLFLMAYGAINPTISTTAFQVFVEACAPAPSFWILTLVALGASLLPYFIYASIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEIPEIKNH 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26177087 26181992 + ClG42_04g0120100.10 Clacu04g1201 247598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1201 1196 SUPERFAMILY Calcium ATPase, transduction domain A 143 284 IPR008250 -
Clacu04g1201 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Clacu04g1201 1196 FunFam Phospholipid-transporting ATPase 539 697 - -
Clacu04g1201 1196 NCBIfam phospholipid-translocating P-type ATPase 56 1148 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Clacu04g1201 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 48 1141 IPR023298 -
Clacu04g1201 1196 FunFam Phospholipid-transporting ATPase 697 903 - -
Clacu04g1201 1196 Pfam Cation transport ATPase (P-type) 520 623 - -
Clacu04g1201 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Clacu04g1201 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Clacu04g1201 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Clacu04g1201 1196 SFLD p-type atpase 407 914 IPR044492 -
Clacu04g1201 1196 Gene3D - 117 287 - -
Clacu04g1201 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1145 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Clacu04g1201 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 699 IPR023299 GO:0000166(InterPro)
Clacu04g1201 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Clacu04g1201 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Clacu04g1201 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Clacu04g1201 1196 Gene3D - 698 903 IPR023214 -
Clacu04g1201 1196 FunFam Phospholipid-transporting ATPase 117 287 - -
Clacu04g1201 1196 SFLD C1.7: P-type atpase like 407 914 - -
Clacu04g1201 1196 Gene3D - 544 697 IPR023299 GO:0000166(InterPro)
Clacu04g1201 1196 NCBIfam HAD-IC family P-type ATPase 108 223 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu04g1201 1196 NCBIfam HAD-IC family P-type ATPase 829 946 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu04g1201 1196 Pfam E1-E2 ATPase 136 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1201 Clacu-Chr4:26177087 Clacu06g0874 Clacu-Chr6:11039642 0.00E+00 dispersed
Clacu07g0242 Clacu-Chr7:2823072 Clacu04g1201 Clacu-Chr4:26177087 1.80E-152 transposed
Clacu04g1201 Clacu-Chr4:26177087 Clacu05g2515 Clacu-Chr5:33258268 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1201 K01530 - csv:101209427 2207.56