Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1211 ATGGCGGACGACTCAATTAACTCTGTCGCCTCCCCAGAAGATTCCTTAAAAGCCCTAATTTATTGGCCTTCCGCGAGTACGAAATCCGGGGTCGAAAACGAATCTGTAGGTGGATTTGATGAAAATCAGCCTCCGATAGACGATAATCCTTCTTCTATCTGTGTAATTTGCTTGTCTGATGATGGAAAAGCGGAGAGAGGTAAGCTTGATTCTTGTGACCATTATTTTTGCTATGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGTAGGTTCAGTGTTGTTCATAGAATTTCGAAGGATGCCTGTCGTCTCCGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCACTCTGCTTCTGGAAATACTAGGATTAGGGATCCATATGCAGAAACGTGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTATTGTGTCGGCCTTGGTACTAATGTACCCGAAGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGACTCAACACAAACATACCGATACTGAATTGGGTACTAGTTGCAACGATCAAAATCAAACAGCAACAGTTGAAGCACACATTGCCATTTCCGAAATAGTAAAAGAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATAGCCATATAAGGGCATTACGTGATAATTGGGATGCTTTACGAAGGGGTTCACTGAACTTTCCCAGCAGCAGCTCATCGAGCTATTGTGGCAACAGTTCCAAACGAGATACTGGTGGTGCTGCACTAAACAACCAAACGGATGAACCCCATTTTTCAACAGCCATTAGCTTGCAGGGCACCTCTGGACCGGAGTGTAACAGAAGCTCTTGTGATATTGAGAAGGCTTGGCGGATGATGGAAATTGCAAAGGCAACGGCTATACGTGCGGGAGATCAAACCTTGAGACATCCTACAAGCAGACAATTGAGCACAAAAACAAAACATTCTCATACAGCGAAAGGTCAACACTACAAAATCAAGAAGCCAAATGAGCCAGCCAAGCATACGAAGGAATTGGGAAAGCAAAGATTGCTCGAGTTGGATAAGCAACTGTGTCATCCAGTAGCAAGTAAGAAGAATAAAGCTTCTCATGAGTTTTTTCCTACAGATTCATCCAGTTATGGAGAATCTTCCTTGGGCAATATGGTTCAGACTCGTCGGGATGATTTCAAACATGAAAATAGAAGAAAGCCATCAAACAAAATGGTGGGTGAACTCTCATCATCTTCCACAATGATACAAGCCTCGGAAAAACGCCATCCTGCTCGTGAGGCTGGCAATGATCAGGATGTCAAAAGTGAGATACGAACACTGGTCAAGATCAATCTAAAACTCCTAAGCCAAGACAAAAATTTGGGATATGAAGGATACAAGGAAGTTGCAAGGCTTGCAACTCACACCATCATGGCAGGATGTGGTTTAGAACCCCCTTCAAAACTCGGCAAGCGATTCTTATCGTGCTCGGTTTGCAGACATACACGAGAAGAAATCCAGCATCTTCGCAGGTCGACTCTGATGCCAGATTCTTGCAGGGAATGCTTCTTGGCGTTTGTGAAGGATGTTGTTAATGCCATAATGTTAGAAAAACTAGTGGTGGGTTCCTCTTCCTAA 1734 44.06 MADDSINSVASPEDSLKALIYWPSASTKSGVENESVGGFDENQPPIDDNPSSICVICLSDDGKAERGKLDSCDHYFCYVCIMEWARIESRCPACKGRFSVVHRISKDACRLRERIVNIPMRNQDHSASGNTRIRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGTNVPEGDWFCHDCTISRTQHKHTDTELGTSCNDQNQTATVEAHIAISEIVKESLPSRGGKAAGTSARTLHRCRNIHSHIRALRDNWDALRRGSLNFPSSSSSSYCGNSSKRDTGGAALNNQTDEPHFSTAISLQGTSGPECNRSSCDIEKAWRMMEIAKATAIRAGDQTLRHPTSRQLSTKTKHSHTAKGQHYKIKKPNEPAKHTKELGKQRLLELDKQLCHPVASKKNKASHEFFPTDSSSYGESSLGNMVQTRRDDFKHENRRKPSNKMVGELSSSSTMIQASEKRHPAREAGNDQDVKSEIRTLVKINLKLLSQDKNLGYEGYKEVARLATHTIMAGCGLEPPSKLGKRFLSCSVCRHTREEIQHLRRSTLMPDSCRECFLAFVKDVVNAIMLEKLVVGSSS 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26295218 26297989 + ClG42_04g0121100.10 Clacu04g1211 247608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1211 577 SUPERFAMILY RING/U-box 46 101 - -
Clacu04g1211 577 SUPERFAMILY FYVE/PHD zinc finger 129 188 IPR011011 -
Clacu04g1211 577 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Clacu04g1211 577 MobiDBLite consensus disorder prediction 428 471 - -
Clacu04g1211 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 104 IPR013083 -
Clacu04g1211 577 Pfam Ring finger domain 54 95 IPR001841 -
Clacu04g1211 577 Pfam PHD-finger 142 185 IPR019787 -
Clacu04g1211 577 MobiDBLite consensus disorder prediction 442 457 - -
Clacu04g1211 577 PANTHER F18C1.6 PROTEIN 51 570 - -
Clacu04g1211 577 MobiDBLite consensus disorder prediction 339 375 - -
Clacu04g1211 577 SMART ring_2 142 185 IPR001841 -
Clacu04g1211 577 SMART ring_2 54 94 IPR001841 -
Clacu04g1211 577 MobiDBLite consensus disorder prediction 349 364 - -
Clacu04g1211 577 ProSiteProfiles Zinc finger RING-type profile. 54 95 IPR001841 -
Clacu04g1211 577 SMART PHD_3 141 186 IPR001965 -
Clacu04g1211 577 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Clacu04g1211 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 198 IPR013083 -
Clacu04g1211 577 MobiDBLite consensus disorder prediction 268 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1211 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0170 Clacu-Chr1:1695181 Clacu04g1211 Clacu-Chr4:26295218 4.30E-12 dispersed
Clacu03g1786 Clacu-Chr3:31588595 Clacu04g1211 Clacu-Chr4:26295218 2.10E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47544 PF00628 PHD 2.80E-09 CL0390 Clacu TR