Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1216 ATGGCGACAAAATCCGAGAAATTTTCTGCGGATTTTGTGATGGGTGGAGTGGCTGCGATTGTAGCCAAAACTGCAGCGGCCCCCATTGAGAGAGTCAAGCTTTTGTTGCAGAATCAGGGAGAGATGATAAAGAGAGGGCATCTTAAGAAACCATATCTGGGCATTCATCACTGTTTCAGAACAGTTTTGAGAGAAGAGGGTCTTTTCTCGCTATGGAGGGGAAATCAGGCTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCGTTCAAAGGTTATTTCAAAACGAAATTTGGGCGCTCGAAAGAGAAAGATGGATACATCAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCAACTACGTCTTTGTTTCTGTATCATTTGGATTATGCACGAACTCGACTTGGCACCGATGCCAAGGATGTTGGCAGTAACAGTCAGCGCCAGTTTAAAGGGATATTGGATGTCTACAGAAAAACATTGTCGAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCGATCGTGGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAGCCTCTTGTTCTGGTTGGACAGTATGAGGGGAACTTTTTTGCTAGTTTCTTATTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCCGGACAAACCCTGAAGTACCGTAGTGGTTTGCATGCCTTTTCTGAGATCATTCGCCATGAGGGCATATCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCAGGGGCTGGCGTTCTTGCAGGTTATGATCAGTTGCACGAAATCGCATGTAGGCATGGTTATTCCTTTGGAGGGCAGCATCAAATAGCCTCAAAATGA 945 44.55 MATKSEKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLKKPYLGIHHCFRTVLREEGLFSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKDVGSNSQRQFKGILDVYRKTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQYEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGISALFRGVTANMLVGVAGAGVLAGYDQLHEIACRHGYSFGGQHQIASK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26332312 26334094 + ClG42_04g0121600.10 Clacu04g1216 247613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1216 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 203 IPR018108 -
Clacu04g1216 314 SUPERFAMILY Mitochondrial carrier 6 294 IPR023395 -
Clacu04g1216 314 Gene3D Mitochondrial carrier domain 2 303 IPR023395 -
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 24 38 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 11 24 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 176 194 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085(InterPro)
Clacu04g1216 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 99 IPR018108 -
Clacu04g1216 314 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Clacu04g1216 314 Pfam Mitochondrial carrier protein 212 298 IPR018108 -
Clacu04g1216 314 Pfam Mitochondrial carrier protein 6 102 IPR018108 -
Clacu04g1216 314 PRINTS Adenine nucleotide translocator signature 111 124 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 PRINTS Adenine nucleotide translocator signature 52 73 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 PRINTS Adenine nucleotide translocator signature 8 20 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 PRINTS Adenine nucleotide translocator signature 85 97 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 PRINTS Adenine nucleotide translocator signature 216 232 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 6 305 IPR002113 GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Clacu04g1216 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 297 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1216 Clacu-Chr4:26332312 Clacu08g1764 Clacu-Chr8:27081055 4.60E-109 dispersed
Clacu04g1216 Clacu-Chr4:26332312 Clacu08g1866 Clacu-Chr8:27936946 1.70E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1216 K05863 - csv:101207715 566.614