Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1218 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGATATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAAAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCCCTTCTTTTACCTCAGCCATTCCAATCCCTTAACATGAGTTGTCCATACTCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCAGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTCGGTGATTAA 741 41.3 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYSTHGTGDDDSAANHDRSSALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26338710 26344922 - ClG42_04g0121800.10 Clacu04g1218 247615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1218 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g1218 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g1218 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu04g1218 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 MobiDBLite consensus disorder prediction 181 221 - -
Clacu04g1218 246 Coils Coil 122 145 - -
Clacu04g1218 246 Coils Coil 151 188 - -
Clacu04g1218 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Clacu04g1218 246 MobiDBLite consensus disorder prediction 176 230 - -
Clacu04g1218 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu04g1218 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1218 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1218 Clacu-Chr4:26338710 Clacu08g1210 Clacu-Chr8:22032334 3.70E-69 dispersed
Clacu10g0813 Clacu-Chr10:14118870 Clacu04g1218 Clacu-Chr4:26338710 5.30E-06 dispersed
Clacu04g1218 Clacu-Chr4:26338710 Clacu04g1219 Clacu-Chr4:26354589 1.10E-41 tandem
Clacu01g2650 Clacu-Chr1:36669442 Clacu04g1218 Clacu-Chr4:26338710 3.90E-30 transposed
Clacu04g1218 Clacu-Chr4:26338710 Clacu07g1610 Clacu-Chr7:30661794 7.70E-43 wgd
Clacu04g1218 Clacu-Chr4:26338710 Clacu08g1209 Clacu-Chr8:22017787 1.90E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47546 PF01486 K-box 3.40E-30 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1218 K09264 - csv:101207225 413.305