Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1219 ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTTTGTAGTGGTTCTAGCATGGCCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCAAGTAAATGAGAACCATCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGATCAGCTTGCAGAACTTCAACACAAGGAACACATGCTTGTGGAAGACAATCGAGGTTTAAGGAAAAAGCTTGAAGAAAGCAGTGCACAACTCACGGCGGCGGCCGCCACATGGGGCTGGGAAGGGGCCGCCGGAGGCCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGGGTCAACGGGGTTGAATAGTGTTGAACCTCCATCCCAAAATGCCAATAATCCGTATCACCTTGGCTGGATGCTTTAA 762 44.49 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMAKTLEKYRRCSYGILDATRQVNENHPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKEHMLVEDNRGLRKKLEESSAQLTAAAATWGWEGAAGGHSMEYPSRVASQSDAFFHPIIQPTPTLQIGYNSVGSTGLNSVEPPSQNANNPYHLGWML 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26354589 26358440 - ClG42_04g0121900.10 Clacu04g1219 247616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1219 253 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu04g1219 253 Pfam K-box region 88 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g1219 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g1219 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu04g1219 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g1219 253 FunFam MADS-box transcription factor 1 13 86 - -
Clacu04g1219 253 Coils Coil 125 145 - -
Clacu04g1219 253 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1219 Clacu-Chr4:26354589 Clacu07g1610 Clacu-Chr7:30661794 1.60E-72 dispersed
Clacu04g1218 Clacu-Chr4:26338710 Clacu04g1219 Clacu-Chr4:26354589 1.10E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47547 PF01486 K-box 3.80E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1219 K09264 - csv:101204197 421.779