Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1222 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGCATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTATTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTATTCTCATGGGTTTTGTGTAAGGACAACAGTTCTTATGTAATCCAATTATATTTGTATAAAGAACAGGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAATTTTGTATATCGATTTTGGCCTCTGTTTCGATTTGCTTAGTAGAAGTTTTGTGCTTTTTGTTCTCCTAGAAGTCCTCATGGTTTCTGAAATTGAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACAGAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGGGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCAAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2739 42.79 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWAWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGILTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTLFSWVLCKDNSSYVIQLYLYKEQEMEGSFEQTLQDGKLYRQILYIDFGLCFDLLSRSFVLFVLLEVLMVSEIEAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTEPSRATAIDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26388732 26396704 + ClG42_04g0122200.10 Clacu04g1222 247619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1222 912 SUPERFAMILY WD40 repeat-like 591 909 IPR036322 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 780 821 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 869 909 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 592 631 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 693 731 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 734 777 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 SMART WD40_4 648 687 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 FunFam Cleavage stimulation factor subunit 50 582 912 - -
Clacu04g1222 912 CDD WD40 595 909 - -
Clacu04g1222 912 ProSitePatterns Trp-Asp (WD) repeats signature. 808 822 IPR019775 -
Clacu04g1222 912 Pfam WD domain, G-beta repeat 596 630 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 Pfam WD domain, G-beta repeat 652 687 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 Pfam WD domain, G-beta repeat 782 821 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 Pfam WD domain, G-beta repeat 747 777 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 797 830 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 Pfam COBRA-like protein 49 212 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 745 777 - -
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 689 - -
Clacu04g1222 912 PANTHER PROTEIN COBRA 13 429 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 696 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 745 786 IPR001680 GO:0005515(InterPro)
Clacu04g1222 912 Gene3D - 580 911 IPR015943 GO:0005515(InterPro)
Clacu04g1222 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1222 Clacu-Chr4:26388732 Clacu07g1606 Clacu-Chr7:30627999 1.80E-169 dispersed
Clacu04g1222 Clacu-Chr4:26388732 Clacu06g1654 Clacu-Chr6:27315643 2.30E-164 wgd
Clacu04g1222 Clacu-Chr4:26388732 Clacu07g1605 Clacu-Chr7:30624564 7.30E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1222 K14406 - csv:101203708 828.935