Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1224 ATGATTAAAATTAAAGGGGCCAAGGATGTAGAAGCCTTTACTGTGCTAGCAATAATGGAGACAGCGTTTCAACCGAACTCGTCTACAATCACCGATCGTGCTGGCCGTCGCGCCGCCAGGTGTATCGCCGTGCGATTTTCTCTCCGTCTCTCTGTATCTTGCATTCTTTTTTCTCTCAACTCCGCTGATGGTTGGCCGGCTGCCGCACAACACGCTCTCAGTCGTTGGAATCGCCCAGGCGTCGTCGAATCTTTCGCCTTCAGCAGGCAGTTCGCAGTGAGGAGCTTGGGTAAGAATTTTCCTTCACGTTTCTTGTCTCTACTTGTTACCCATGAGGAATTGACTCCGAATTTGGTTACCTTTGATGTTTTGCCCTTAGATTTAAGGGATTGGAGGATTTTAGCACGCTACCAGCGAATTAAGCTTTTTCGGCAGAAATCAGTGGGTAGTGCCATGGAAGAAGAGATCGGAGAAGAATTCAAGAGGAGTGGTTTCACGTTCGATGAAGAGGAAGAGATTCTCCAAAAATGTGTTACGTTCTGTGTTAATTACAATCTAAAGCCTTCAGATATTGTTTCTAGCTGGGAGGTCTACTATCTCAACAGGCAATTAGATGGGTCATTGGTGCAAATTGAACAGATGGATGGGTTCTTACAACATTTACAGAATGAGCAAAAAGAAGCAGTCATTAAAGGGGAACCAGATCTTCATGTTTACTCGAGCAAAGATGTGGAAGCGATTTTGAATGATGAGGATGAAGATCTAAATGGAGACATTCTTAAGACTCCAAATGGGAAATCTCAGAGCCTCCACAAAGAGCGATTGGGTTTGACACCTTACACGAATGAAGGCTTGTTCTCCTCGGGAAAGCCTTCAAAGCATGTTACACCCTTTGGCCAAAGAACAGAGAAGTTTGTTGTGAGGCTCAACATTAATAGCATGCCTGATAAGGTGACGGCTGAAAAGGAAGATAATTGCGAGAATGATGAAGATGCAATCATCAAGAAGGTTCGACCCCTGCAAGGATGCTTATTGACAGTCCATGGATCAGGATTTGGACTTGAACCAAATTGCAGGTTCATGTATGACAAGGATGAAGATAGGTTTAATGCTCTTGATAACCGAATCATGAGGCATGCTAAAGCTCTTGCTGCATCTGGGCTCTACGAAGAAGCAGTGGACCCTACAGTTGCTTCACAGAAAAACATGTTTGCAGTGGGCATGATTTATTGTGATGGTGAAGGACACTTGAACGATAAGTCCACCTTGTTGCAAAGCAGTATCACGCATTCAGGGGGGCAGCGAGTTCGTCTAGAATTACAACACTTAAGCCAATTTTCAATCTTTCCTGGCCAGGTAGTAGGTATTGAAGGGCATAATCCTAGTGGACACTGCTTGATTGCGTCCAAACTTGTAGATTCTTTTCCTCTGTCTGCCACTATAGACCCCATTCTGCCTCCAGCAAAGAAGATAGCTTTGAACCATGATATCCAACCAATTAATCAATCCTCTACACCGTCAGAATTATCGATGATCATTGCATCCGGCCCCTATACAACAACGGACAACTTATTGTTTGAGCCTTTGAATGAGTTATTAGCATATGCAAAAAGAAAAGTTCCCCAGCTACTAATATTGCTTGGACCATTTGTTGATTCTGAACATTCTGATATCAAGAGAGGAACTGTAGAGATGAGCTTTGAGGAAATTTTCAACTTTGAAGTTTTAAGAAGGGTACAAGATTATGCAGAACACATGGGTCCTGATGCACGTGTACTGTTGATGCCATCTACAAGGGATGCTCATCACGACTTTGTTTTTCCTCAGCCTGCTTTTGACATTCCATCTGATCTCAGACTTCAGATATCCAGTCTCCCAAACCCATGCATTTTGGAAGCAAATCAGGCAACGATAGCCTGCTGCACCATGGATATTCTCAGACACCTTAGTGGAGAAGAGCTGTCAAGAAACCTAACTAAGGGAGCAACCAACGACCGCCTGAGCACACTTGCAAGTCATATACTTCGCCAGCGCAGCTTTTATCCTCTATACCCTCCAGCCGAAGGAGTTCCACTAGACTTTTCACTTGCCCCAAAAGCTCTTGACATTGCTGTAATACCCGATATTCTCATTCTTCCATCCGACATGAAACACTTCGTGAAGGTCATATCCCTTGGTGAAGGAGGTCCAGAGGAAGAGCAAGCGAGATGCATATGTGTGAATCCTGGAAGATTGGCCAAGGGTGAAGGAGGAGGTACTTTTGTAGAGCTTAATTACTTCGGTAGGCCTGACCAGATAAATGCTTCAGTTGTCAGCATATGA 2322 44.19 MIKIKGAKDVEAFTVLAIMETAFQPNSSTITDRAGRRAARCIAVRFSLRLSVSCILFSLNSADGWPAAAQHALSRWNRPGVVESFAFSRQFAVRSLGKNFPSRFLSLLVTHEELTPNLVTFDVLPLDLRDWRILARYQRIKLFRQKSVGSAMEEEIGEEFKRSGFTFDEEEEILQKCVTFCVNYNLKPSDIVSSWEVYYLNRQLDGSLVQIEQMDGFLQHLQNEQKEAVIKGEPDLHVYSSKDVEAILNDEDEDLNGDILKTPNGKSQSLHKERLGLTPYTNEGLFSSGKPSKHVTPFGQRTEKFVVRLNINSMPDKVTAEKEDNCENDEDAIIKKVRPLQGCLLTVHGSGFGLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKNMFAVGMIYCDGEGHLNDKSTLLQSSITHSGGQRVRLELQHLSQFSIFPGQVVGIEGHNPSGHCLIASKLVDSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLNELLAYAKRKVPQLLILLGPFVDSEHSDIKRGTVEMSFEEIFNFEVLRRVQDYAEHMGPDARVLLMPSTRDAHHDFVFPQPAFDIPSDLRLQISSLPNPCILEANQATIACCTMDILRHLSGEELSRNLTKGATNDRLSTLASHILRQRSFYPLYPPAEGVPLDFSLAPKALDIAVIPDILILPSDMKHFVKVISLGEGGPEEEQARCICVNPGRLAKGEGGGTFVELNYFGRPDQINASVVSI 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26398459 26408563 - ClG42_04g0122400.10 Clacu04g1224 247621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1224 773 FunFam DNA polymerase alpha subunit B 492 656 - -
Clacu04g1224 773 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 153 759 IPR016722 GO:0005658(PANTHER)|GO:0006270(PANTHER)
Clacu04g1224 773 Pfam DNA polymerase alpha subunit B, OB domain 372 472 IPR054300 -
Clacu04g1224 773 Gene3D - 150 228 IPR043034 -
Clacu04g1224 773 Pfam DNA polymerase alpha subunit B N-terminal 154 203 IPR013627 -
Clacu04g1224 773 Pfam DNA polymerase alpha/epsilon subunit B 512 721 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Clacu04g1224 773 Gene3D - 664 770 - -
Clacu04g1224 773 Gene3D - 490 662 - -
Clacu04g1224 773 FunFam DNA polymerase alpha subunit B 151 225 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1224 K02321 - csv:101206268 1176.77