Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu04g1225 | ATGTCTTTAGAACAAGAATTTCTGTTCCTTATTCCCTCAACAATGGCCAATAATCTCAATATCTTTCTTTGTTTTCTTCTCTTCGTGGCTATTTTCACCCTTTGCCTCACCCCTGGTGGTCTAGCTTGGGCTCTAATTTCAAAGCCAAGAAACAAACCTACCATTCCTGGCCCTTGTGGGACTCCTATTTTAGGTCAAGTTTCTGCCTTTACCACTTCTTTAACTCATAAAGTCCTTGCTAAGCTTGCTCATACCTTAAATGCCAAATCTTTAATGTCATTCTCAATTGGGTTCACTCGTTTTGTGATTTCTAGCAATCCCATCATAGCCAAAGAGCTTTTGAATAGCTCAGCTTTTGCTGATCGTCCAATTAAGGAATCAGCTTATGAGCTTTTGTTTCATAGAGCAATGGGGTTTGCTCCTTATGGGGAATATTGGAGGAATCTTAGGAGAATTTCAGCCACTCATTTGTTTAGTCCTAAAAGGGTTTGTGGATTTGGGGTTTTGAGGGAGAGAATTGGAGTTAAAATGATGGAGGAAATTAAGGGTTTGATGGAGAAGAATGGGGAAGTTGAAGTTAGGAAAATCTTGCATTTTGGGTCATTGAGTAATGTTATGGGGAGTGTGTTTGGGAAAAGTGTTGAGTTTGGTGATAGTGAGATTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTTAATTGGAGTGATCATTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGTAAAGTTTTGGTGGGGAAAGTTAATGTTTTTGTTGGAAAAATCATTGAGGAGCATAGAATGAAAAGGAGGGTTGTTAGTAAAGGAAATAATAACCCTAATGATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGCAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTCCGAGGAACAGACACCGTGGCAATTCTCCTAGAATGGATTTTAGCAAGAATGGTTCTTCATCCCGATATCCAAGCCAAACTCCAATCCGAAATCGACCGAGTCGTTGCCAAAACCGGCCGAAACATCTCGGATTCAGACCTCCCAAATCTCCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCTCCGGGCCCACTCCTCTCCTGGGCCCGCCTCGCCATTCACGACACCCACGTGGCCGGCCACTTCATTCCCGCCGGCACGACGGCGATGGTTAACATGTGGGCCATAACCCACGACGACCAAATCTGGACCGACCCGACTACATACGACCCGGATCGGTTCATTAAAGATGACGTGGCGATAATGGGGTCGGATTTGCGGCTCGCGCCTTTCGGGTCCGGAAGAAGGGTTTGTCCTGGTAAAGCCATGGGGCTAGCCACGGTCGAGCTTTGGCTCGCTCAGTTGGTTCATAGGTTCGAATGGGTTGAGGCTGGTGGCTGGGAAAATGGAGGAGTTGATCTGTCTGAGTGTTTGAAGCTGTCTCTGGAGATGAAACACCCTTTGATTTGTAGGGCTGTTCCTAGGATTGTGGGGCTTGAGTCTCACCCATGA | 1593 | 44.76 | MSLEQEFLFLIPSTMANNLNIFLCFLLFVAIFTLCLTPGGLAWALISKPRNKPTIPGPCGTPILGQVSAFTTSLTHKVLAKLAHTLNAKSLMSFSIGFTRFVISSNPIIAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRVCGFGVLRERIGVKMMEEIKGLMEKNGEVEVRKILHFGSLSNVMGSVFGKSVEFGDSEIEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKVLVGKVNVFVGKIIEEHRMKRRVVSKGNNNPNDNEDGDFVDVLLDLQKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQAKLQSEIDRVVAKTGRNISDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVAGHFIPAGTTAMVNMWAITHDDQIWTDPTTYDPDRFIKDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHRFEWVEAGGWENGGVDLSECLKLSLEMKHPLICRAVPRIVGLESHP | 530 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26417156 | 26419177 | - | ClG42_04g0122500.10 | Clacu04g1225 | 247622 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu04g1225 | 530 | PANTHER | CYTOCHROME P450 78A7-RELATED | 18 | 519 | IPR051996 | - | |
| Clacu04g1225 | 530 | SUPERFAMILY | Cytochrome P450 | 55 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | Gene3D | Cytochrome P450 | 44 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | FunFam | Cytochrome P450 78A5 | 47 | 522 | - | - | |
| Clacu04g1225 | 530 | Pfam | Cytochrome P450 | 56 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 377 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 333 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | E-class P450 group I signature | 313 | 330 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | PRINTS | P450 superfamily signature | 324 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g1225 | 530 | CDD | CYP78 | 87 | 515 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0093 | Clacu-Chr2:997910 | Clacu04g1225 | Clacu-Chr4:26417156 | 7.50E-136 | dispersed | |
| Clacu04g1225 | Clacu-Chr4:26417156 | Clacu11g1556 | Clacu-Chr11:26668648 | 1.70E-151 | dispersed | |
| Clacu11g1502 | Clacu-Chr11:26165401 | Clacu04g1225 | Clacu-Chr4:26417156 | 1.10E-10 | dispersed | |
| Clacu04g1225 | Clacu-Chr4:26417156 | Clacu08g1206 | Clacu-Chr8:21978404 | 4.60E-194 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu04g1225 | K20619 | - | csv:101203458 | 948.347 |