Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1242 ATGGCCATGGCAGCTCTGAGACGTGAAGGGAGGCGGCTCGCTACTGTGATCTCTCCTCAACCAATCACCGCTCTCCGGTCTTCCCTCGTTTACGAGGAACAAGCTCCTCTTGGTGTTCGCTCCATCTCCACTCAAGTGGTTAGAAATCGAATGAAGAGTGTGAAAAATATCCAGAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCAAAGCTGCGGGCAATTCAAGTGCGTGCTGAAAATTCTCGTGGCCTCTGGCAACCATTTACTGCACTTCTTGGGGATACTCCAAGTGTTGATGTAAAGAAGAATGTCATTGTTACCATTTCTTCTGACAAGGGTCTTTGTGGTGGAATTAATTCTACCTCAGTCAAGATAAGCAAGGCTCTACACAAGATAAATTCTGGTCCTGAAAAGGAATCAAAATATGTTGTATTGGGAGAGAAGGCAAAGGCTCAGTTAATACGTGACTCCAAGAAGCACATAGAAATCATCTTCACTGAGTTGCAGAAGAATCCTTTGAACTATACTCAGGTCTCTGTCTTAGCTGATGATATTCTAAAGAACGTAGAATATGATGCTCTGAGGATTGTTTTCAACAAGTTCCATTCAGTTGTCTCATTTCTGCCTACAACATCTACCGTTCTGTCTCCTGAGATTGTTGAAAGAGAGGCAGAATCTGGGGGAAGCCTTGGCGACCTGGACTCATATGAGATTGAAGGCGGCGAGACAAAGGCTGAGATTCTCCAAAATCTTACAGAGTTCCAGTTTTCTTGTGTACTGTTCAACGCCGTATTGGAAAATGCATGCAGTGAACAAGGTGCAAGGATGTCTGCAATGGACAGCTCTAGCAGAAACGCTGGGGAAATGCTTGATCGTCTCACATTAACTTATAACAGAACCCGGCAAGCGTCTATCACCACTGAGTTGATTGAAATTATATCTGGAGCTTCGGCATTGGAGGGCTAG 969 44.48 MAMAALRREGRRLATVISPQPITALRSSLVYEEQAPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAIQVRAENSRGLWQPFTALLGDTPSVDVKKNVIVTISSDKGLCGGINSTSVKISKALHKINSGPEKESKYVVLGEKAKAQLIRDSKKHIEIIFTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFLPTTSTVLSPEIVEREAESGGSLGDLDSYEIEGGETKAEILQNLTEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26518745 26521920 - ClG42_04g0124200.10 Clacu04g1242 247639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1242 322 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 317 - -
Clacu04g1242 322 Gene3D - 67 279 - -
Clacu04g1242 322 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 PRINTS ATP synthase gamma subunit signature 298 319 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 NCBIfam ATP synthase F1 subunit gamma 43 320 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 PANTHER ATP SYNTHASE GAMMA CHAIN 30 320 IPR000131 GO:0000275(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Clacu04g1242 322 PIRSF ATP_synthase_gamma 9 320 - -
Clacu04g1242 322 CDD F1-ATPase_gamma 43 317 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 ProSitePatterns ATP synthase gamma subunit signature. 306 319 IPR023632 -
Clacu04g1242 322 FunFam ATP synthase subunit gamma 67 279 - -
Clacu04g1242 322 FunFam ATP synthase gamma chain 275 317 - -
Clacu04g1242 322 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 44 320 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu04g1242 322 Pfam ATP synthase 44 320 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1242 K02136 - - csv:101222697 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1242 Clacu-Chr4:26518745 Clacu10g0519 Clacu-Chr10:6286688 6.00E-27 dispersed
Clacu04g1242 Clacu-Chr4:26518745 Clacu03g0464 Clacu-Chr3:5009546 1.30E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g654 . . Bda06g00524 Bda15g00621 Bpe12g00525 . . Bma12g00967 Cmo13g01124 . . . . . . Cpe20g00071 . . . . . . . . . . . . . . . Cone2ag0804 . . . Lsi02g00117 Csa01g00596 Chy12g01502 Cme12g01946 . Blo15g00334 . . . . . . Sed01g2299 . . Cma13g01077 . Car13g00913 . . . Bhi08g01087 Tan05g2365 Cmetu12g0105 Lac10g0145 Hepe07g2467 . . Cla04g01157 Cam04g1215 Cec01g1726 Cco01g1771 Clacu04g1242 Cmu04g1221 Cre01g1517 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008823 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34