Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1264 ATGGGGTGTGTGAACTCGAAGCAGGCAGTGTCCGTCACGCCTGCATTCGATCACTCCGGCGTGTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGAGTTGGGTTCGGGGAGATTGAGAAGAGTTCGAAGCCGAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGTGCGAGTTCGGTGAGTCGGGGAGAGCGAGTTCAAATGGTGGAGGAAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGCGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGAAGGATCGTTGCTCTAAAGAAAGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTCGTGTTTGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCCGATATCACTTTTAGTGAATCGCAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGACAACCTCTAACGAGTCGCGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTTTTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTGTGAAACCGTATGCATGCGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCCAAACAAAGAGAGGAGACTAGAAGGAAAAAAGGTAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATTTTAAAGAAGAAAAAGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACCATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACTTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGTTTCATGAAAAGGGTGACATGTCGTCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGACAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAAACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGGTCATGGTTTCAAAGAGGTAAAAATTGA 2091 45.0 MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRVGFGEIEKSSKPKAKMKTKGSSEFNGVGCEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPPTTVNLLETLLSVEPYKRGVASSALTSEYFSVKPYACDPSSMPIYPPNKEIDAKQREETRRKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNFKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSNLDSKFHEKGDMSSISRSSSKGHESNERSKVVTRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLNRHERHIRQTVRRSWFQRGKN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26742201 26746790 + ClG42_04g0126400.10 Clacu04g1264 247661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1264 696 MobiDBLite consensus disorder prediction 578 626 - -
Clacu04g1264 696 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
Clacu04g1264 696 PANTHER CELL DIVISION PROTEIN KINASE 127 411 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu04g1264 696 MobiDBLite consensus disorder prediction 41 55 - -
Clacu04g1264 696 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Clacu04g1264 696 FunFam probable serine/threonine-protein kinase At1g54610 210 450 - -
Clacu04g1264 696 MobiDBLite consensus disorder prediction 424 455 - -
Clacu04g1264 696 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
Clacu04g1264 696 CDD STKc_CDK9_like 127 411 - -
Clacu04g1264 696 MobiDBLite consensus disorder prediction 596 626 - -
Clacu04g1264 696 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1264 696 MobiDBLite consensus disorder prediction 25 58 - -
Clacu04g1264 696 MobiDBLite consensus disorder prediction 431 455 - -
Clacu04g1264 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1264 696 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1264 696 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
Clacu04g1264 696 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524(InterPro)
Clacu04g1264 696 SMART serkin_6 127 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1264 Clacu-Chr4:26742201 Clacu05g0668 Clacu-Chr5:5621629 5.70E-160 dispersed
Clacu04g0155 Clacu-Chr4:3866725 Clacu04g1264 Clacu-Chr4:26742201 1.10E-49 transposed
Clacu11g0603 Clacu-Chr11:5811665 Clacu04g1264 Clacu-Chr4:26742201 1.30E-184 transposed
Clacu04g1264 Clacu-Chr4:26742201 Clacu08g1174 Clacu-Chr8:21726395 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73523 PF00069 Pkinase 8.70E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1264 - - - 0.0