Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1268 ATGGAAATGGGTCACATTTCATATGGTTCATTGGAGAAAGATCTGCAGGTGACGTGGCTTCTTCGCCATCTCTACATAACTATCCAAACCTCACCATTCCAATATCTCCTTTTGCACTTTTTTCCTATCTATTCTCTCTCTTTTGCTAGCGTGAGCTTCTTCTTTCATCAATCTCAACCCTCCATCACCCACCATTTTCGATCAAGCCCGTGCATTTTAGCTCACAAGCTGATCGAGCAAAGATATTTGAACGGAATCGCGTTTTGTTTAGGTTCTGGTTTAGCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATCGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGTCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGCTCATCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTGCTTGCAATCTCAATGTTGGCAAGAGATCCGATTCTGCCTGCTGTTACATGTCCATTTGCTTGCACCGGGTCCTTGTAGCCTTGCGGTTACTGCACAAACAGATTCAACTCGTTTGGGGCATAGATGGTGTCTGATAAGCTTGCCCTGTGCTTCAACACACTGCAAAGGCAGGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTATAGTATAATAAATCCAAACAAGAATTCGATCTGGCAAAACGAGGCATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCTCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGCTAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 2385 43.27 MEMGHISYGSLEKDLQVTWLLRHLYITIQTSPFQYLLLHFFPIYSLSFASVSFFFHQSQPSITHHFRSSPCILAHKLIEQRYLNGIAFCLGSGLAVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAAHLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYCLQSQCWQEIRFCLLLHVHLLAPGPCSLAVTAQTDSTRLGHRWCLISLPCASTHCKGRSLSQFQSAATGISIYSIINPNKNSIWQNEAFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVELITVIDSIVRLVAVVD 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26772822 26779229 - ClG42_04g0126800.10 Clacu04g1268 247665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1268 794 ProSiteProfiles Response regulatory domain profile. 129 247 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 406 445 - -
Clacu04g1268 794 Pfam Response regulator receiver domain 130 241 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 ProSiteProfiles CCT domain profile. 567 609 IPR010402 GO:0005515(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 413 432 - -
Clacu04g1268 794 MobiDBLite consensus disorder prediction 273 295 - -
Clacu04g1268 794 SMART REC_2 128 243 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 623 639 - -
Clacu04g1268 794 Pfam CCT motif 567 609 IPR010402 GO:0005515(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 325 349 - -
Clacu04g1268 794 MobiDBLite consensus disorder prediction 617 646 - -
Clacu04g1268 794 SUPERFAMILY CheY-like 126 254 IPR011006 -
Clacu04g1268 794 Gene3D - 128 339 - -
Clacu04g1268 794 PANTHER TWO-COMPONENT RESPONSE REGULATOR 126 321 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0916 Clacu-Chr4:23456449 Clacu04g1268 Clacu-Chr4:26772822 2.00E-12 dispersed
Clacu04g1268 Clacu-Chr4:26772822 Clacu11g0484 Clacu-Chr11:4586300 4.40E-15 dispersed
Clacu11g1418 Clacu-Chr11:25084100 Clacu04g1268 Clacu-Chr4:26772822 9.90E-06 dispersed
Clacu04g1268 Clacu-Chr4:26772822 Clacu06g1305 Clacu-Chr6:23960247 3.10E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47552 PF00072 Response_reg 1.40E-16 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1268 K12127 - csv:101220107 982.245