Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1268 ATGGAAATGGGTCACATTTCATATGGTTCATTGGAGAAAGATCTGCAGGTGACGTGGCTTCTTCGCCATCTCTACATAACTATCCAAACCTCACCATTCCAATATCTCCTTTTGCACTTTTTTCCTATCTATTCTCTCTCTTTTGCTAGCGTGAGCTTCTTCTTTCATCAATCTCAACCCTCCATCACCCACCATTTTCGATCAAGCCCGTGCATTTTAGCTCACAAGCTGATCGAGCAAAGATATTTGAACGGAATCGCGTTTTGTTTAGGTTCTGGTTTAGCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATCGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGTCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGCTCATCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGGAAGCAAGCAAGTGCTCATATTTACTGCTTGCAATCTCAATGTTGGCAAGAGATCCGATTCTGCCTGCTGTTACATGTCCATTTGCTTGCACCGGGTCCTTGTAGCCTTGCGGTTACTGCACAAACAGATTCAACTCGTTTGGGGCATAGATGGTGTCTGATAAGCTTGCCCTGTGCTTCAACACACTGCAAAGGCAGGAGCTTGTCTCAGTTCCAATCTGCTGCTACTGGAATATCCATCTATAGTATAATAAATCCAAACAAGAATTCGATCTGGCAAAACGAGGCATTCAGCATAGCTGCAATGCTTCTTGCTGCCTCTCTCTCTGAGATACAAGCTAAACACTGCCATCTTGTTTCATTTTCCAATTTGAAGGCAGTACTTTCTGTTGAGCTAATAACAGTGATCGATTCAATTGTGCGACTTGTTGCAGTAGTTGACTGA 2385 43.27 MEMGHISYGSLEKDLQVTWLLRHLYITIQTSPFQYLLLHFFPIYSLSFASVSFFFHQSQPSITHHFRSSPCILAHKLIEQRYLNGIAFCLGSGLAVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAAHLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGKQASAHIYCLQSQCWQEIRFCLLLHVHLLAPGPCSLAVTAQTDSTRLGHRWCLISLPCASTHCKGRSLSQFQSAATGISIYSIINPNKNSIWQNEAFSIAAMLLAASLSEIQAKHCHLVSFSNLKAVLSVELITVIDSIVRLVAVVD 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26772822 26779229 - ClG42_04g0126800.10 Clacu04g1268 247665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1268 794 ProSiteProfiles Response regulatory domain profile. 129 247 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 406 445 - -
Clacu04g1268 794 Pfam Response regulator receiver domain 130 241 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 ProSiteProfiles CCT domain profile. 567 609 IPR010402 GO:0005515(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 413 432 - -
Clacu04g1268 794 MobiDBLite consensus disorder prediction 273 295 - -
Clacu04g1268 794 SMART REC_2 128 243 IPR001789 GO:0000160(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 623 639 - -
Clacu04g1268 794 Pfam CCT motif 567 609 IPR010402 GO:0005515(InterPro)
Clacu04g1268 794 MobiDBLite consensus disorder prediction 325 349 - -
Clacu04g1268 794 MobiDBLite consensus disorder prediction 617 646 - -
Clacu04g1268 794 SUPERFAMILY CheY-like 126 254 IPR011006 -
Clacu04g1268 794 Gene3D - 128 339 - -
Clacu04g1268 794 PANTHER TWO-COMPONENT RESPONSE REGULATOR 126 321 IPR045279 GO:0009736(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1268 K12127 - - csv:101220107 982.245
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0916 Clacu-Chr4:23456449 Clacu04g1268 Clacu-Chr4:26772822 2.00E-12 dispersed
Clacu04g1268 Clacu-Chr4:26772822 Clacu11g0484 Clacu-Chr11:4586300 4.40E-15 dispersed
Clacu11g1418 Clacu-Chr11:25084100 Clacu04g1268 Clacu-Chr4:26772822 9.90E-06 dispersed
Clacu04g1268 Clacu-Chr4:26772822 Clacu06g1305 Clacu-Chr6:23960247 3.10E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1900 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Clacu11g0484 . 13 340 Response Regulator Gene Family AT4G31920 51.2 6.1e-80 295.4
Clacu06g0463 . 78 333 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Clacu05g0738 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Clacu08g1900 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Clacu05g1796 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.4e-42 170.2
Clacu05g0738 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Clacu06g1305 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Clacu11g0484 . 15 359 Response Regulator Gene Family AT2G25180 55.2 6.8e-85 312.0
Clacu05g0738 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Clacu08g1900 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Clacu06g0463 . 141 374 Response Regulator Gene Family AT2G01760 51.4 7.4e-54 208.0
Clacu06g1305 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Clacu08g1900 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Clacu08g1900 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Clacu06g0463 . 79 304 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Clacu05g0738 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Clacu05g1796 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.0e-61 234.2
Clacu08g1900 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Clacu06g1305 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Clacu11g0484 . 18 266 Response Regulator Gene Family AT4G16110 51.7 2.2e-52 204.1
Clacu06g1772 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.6e-54 206.8
Clacu05g2695 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Clacu01g0751 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.4e-41 164.5
Clacu04g0453 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Clacu05g2882 . 4 168 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Clacu10g1595 . 3 156 Response Regulator Gene Family AT3G48100 53.2 8.7e-39 157.1
Clacu07g0533 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Clacu05g2695 . 1 201 Response Regulator Gene Family AT1G59940 60.0 1.8e-55 213.4
Clacu06g1772 . 32 177 Response Regulator Gene Family AT1G59940 66.4 1.8e-47 186.8
Clacu01g0751 . 5 152 Response Regulator Gene Family AT1G59940 58.8 1.6e-40 163.7
Clacu05g2882 . 11 154 Response Regulator Gene Family AT1G59940 59.7 3.1e-39 159.5
Clacu10g1595 . 8 154 Response Regulator Gene Family AT1G59940 56.5 3.1e-39 159.5
Clacu04g0453 . 11 154 Response Regulator Gene Family AT1G59940 56.3 8.9e-39 157.9
Clacu07g0533 . 18 153 Response Regulator Gene Family AT1G59940 60.3 4.4e-38 155.6
Clacu05g2695 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Clacu06g1772 . 32 177 Response Regulator Gene Family AT1G10470 67.8 1.2e-46 183.7
Clacu10g1595 . 10 162 Response Regulator Gene Family AT1G10470 56.2 4.7e-40 161.8
Clacu01g0751 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.0e-39 160.6
Clacu04g0453 . 17 168 Response Regulator Gene Family AT1G10470 56.9 1.2e-38 157.1
Clacu05g2882 . 11 176 Response Regulator Gene Family AT1G10470 52.4 2.6e-38 156.0
Clacu07g0533 . 23 153 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Clacu06g1772 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.6e-54 206.8
Clacu05g2695 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Clacu01g0751 . 11 151 Response Regulator Gene Family AT3G48100 61.0 5.4e-41 164.5
Clacu04g0453 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Clacu05g2882 . 4 168 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Clacu10g1595 . 3 156 Response Regulator Gene Family AT3G48100 53.2 8.7e-39 157.1
Clacu07g0533 . 23 154 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Clacu06g1772 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Clacu05g2695 . 9 175 Response Regulator Gene Family AT5G62920 62.3 4.2e-49 191.4
Clacu01g0751 . 11 151 Response Regulator Gene Family AT5G62920 61.0 1.6e-40 162.9
Clacu04g0453 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.0e-39 160.2
Clacu10g1595 . 10 156 Response Regulator Gene Family AT5G62920 55.8 3.0e-39 158.7
Clacu05g2882 . 11 171 Response Regulator Gene Family AT5G62920 52.5 9.7e-38 153.7
Clacu06g1772 . 29 182 Response Regulator Gene Family AT1G19050 71.3 4.5e-52 201.4
Clacu05g2695 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.3e-45 177.9
Clacu05g2882 . 8 159 Response Regulator Gene Family AT1G19050 54.6 9.7e-39 157.1
Clacu10g1595 . 5 156 Response Regulator Gene Family AT1G19050 53.3 1.7e-38 156.4
Clacu04g0453 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.8e-38 155.6
Clacu01g0751 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Clacu07g0533 . 23 154 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Clacu04g0453 . 8 264 Response Regulator Gene Family AT2G41310 54.1 1.1e-59 226.9
Clacu10g1595 . 1 157 Response Regulator Gene Family AT2G41310 72.0 2.8e-55 212.2
Clacu01g0751 . 1 153 Response Regulator Gene Family AT2G41310 64.3 8.7e-49 190.7
Clacu08g0725 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.3e-43 170.6
Clacu05g2695 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Clacu06g1772 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Clacu07g0533 . 17 154 Response Regulator Gene Family AT2G41310 55.6 5.6e-40 161.4
Clacu04g0453 . 8 264 Response Regulator Gene Family AT3G57040 53.1 2.9e-63 238.8
Clacu10g1595 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.5e-56 216.5
Clacu01g0751 . 8 153 Response Regulator Gene Family AT3G57040 67.1 3.7e-50 195.3
Clacu05g2882 . 4 158 Response Regulator Gene Family AT3G57040 65.0 3.1e-49 192.2
Clacu05g2695 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.9e-43 172.9
Clacu08g0725 . 11 174 Response Regulator Gene Family AT3G57040 56.4 1.9e-43 172.9
Clacu06g1772 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Clacu07g0533 . 20 154 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Clacu06g1772 . 26 182 Response Regulator Gene Family AT1G74890 70.8 5.3e-53 204.5
Clacu05g2695 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.3e-47 184.9
Clacu05g2882 . 5 159 Response Regulator Gene Family AT1G74890 56.8 6.7e-40 161.0
Clacu04g0453 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.6e-39 159.1
Clacu01g0751 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Clacu10g1595 . 8 154 Response Regulator Gene Family AT1G74890 55.1 9.7e-39 157.1
Clacu07g0533 . 23 150 Response Regulator Gene Family AT1G74890 60.2 5.3e-37 151.4
Clacu07g0533 . 23 155 Response Regulator Gene Family AT2G40670 70.1 2.0e-47 185.7
Clacu05g2695 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Clacu10g1595 . 6 156 Response Regulator Gene Family AT2G40670 55.3 3.2e-40 161.8
Clacu06g1772 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Clacu04g0453 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.3e-37 150.6
Clacu07g0533 . 5 155 Response Regulator Gene Family AT3G56380 66.4 6.6e-48 187.2
Clacu05g2695 . 23 159 Response Regulator Gene Family AT3G56380 52.9 3.0e-40 161.8
Clacu06g1772 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.0e-40 161.0
Clacu10g1595 . 6 156 Response Regulator Gene Family AT3G56380 53.3 4.3e-39 157.9
Clacu01g0751 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Clacu05g2882 . 3 149 Response Regulator Gene Family AT3G56380 55.4 5.2e-37 151.0
Clacu08g1900 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Clacu06g0463 . 79 304 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Clacu05g0738 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Clacu05g1796 . 12 233 Response Regulator Gene Family AT4G16110 55.4 2.0e-61 234.2
Clacu08g1900 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Clacu06g1305 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Clacu11g0484 . 18 266 Response Regulator Gene Family AT4G16110 51.7 2.2e-52 204.1
Clacu11g0484 . 13 340 Response Regulator Gene Family AT4G31920 51.2 6.1e-80 295.4
Clacu06g0463 . 78 333 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Clacu05g0738 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Clacu08g1900 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Clacu05g1796 . 93 255 Response Regulator Gene Family AT1G67710 55.6 2.4e-42 170.2
Clacu05g0738 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Clacu06g1305 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Clacu11g0484 . 15 359 Response Regulator Gene Family AT2G25180 55.2 6.8e-85 312.0
Clacu05g0738 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Clacu08g1900 . 11 256 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Clacu06g0463 . 141 374 Response Regulator Gene Family AT2G01760 51.4 7.4e-54 208.0
Clacu06g1305 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Clacu08g1900 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Clacu08g1900 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Clacu04g1268 . 102 647 Response Regulator Gene Family AT5G61380 50.8 9.1e-141 497.7
Clacu04g0916 . 38 205 Response Regulator Gene Family AT5G60100 68.0 5.6e-54 208.8
Clacu01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47552 PF00072 Response_reg 1.40E-16 CL0304 Clacu TR