Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1270 ATGGCTTTCAAGAGGACCTGTGTCAGTCTATGGAGGTCGCCGAATCAGAAAAGGGTTCCTCAGTGGAAGTCCAAAATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCATCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGTTGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGATTTAAGAAGATTATGTGCTGAAAAGGGAGTTAACCCATGGATCGAGGTGGACGGTGGAGTCGGTCCAGCCAATGCATACAAGGTAATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCCATAAAAGGAATCAAAACAAGCAAAAGGCCGGAGGCAGTTCCATATTGTTGTGTTATTCATTGCCATAGAGAATCTCCAACTGCATAG 966 43.89 MAFKRTCVSLWRSPNQKRVPQWKSKMAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPYCCVIHCHRESPTA 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26783106 26788596 - ClG42_04g0127000.10 Clacu04g1270 247667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1270 321 NCBIfam ribulose-phosphate 3-epimerase 87 298 IPR026019 GO:0004750(InterPro)|GO:0006098(InterPro)
Clacu04g1270 321 Hamap Ribulose-phosphate 3-epimerase [rpe]. 84 300 IPR026019 GO:0004750(InterPro)|GO:0006098(InterPro)
Clacu04g1270 321 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 114 128 IPR000056 GO:0005975(InterPro)|GO:0016857(InterPro)
Clacu04g1270 321 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 218 240 IPR000056 GO:0005975(InterPro)|GO:0016857(InterPro)
Clacu04g1270 321 SUPERFAMILY Ribulose-phoshate binding barrel 80 301 IPR011060 -
Clacu04g1270 321 CDD RPE 86 298 IPR000056 GO:0005975(InterPro)|GO:0016857(InterPro)
Clacu04g1270 321 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 81 304 IPR000056 GO:0004750(PANTHER)|GO:0005829(PANTHER)|GO:0005975(InterPro)|GO:0009052(PANTHER)|GO:0016857(InterPro)|GO:0044262(PANTHER)|GO:0046872(PANTHER)
Clacu04g1270 321 FunFam Ribulose-phosphate 3-epimerase 82 304 - -
Clacu04g1270 321 Gene3D Aldolase class I 75 304 IPR013785 -
Clacu04g1270 321 Pfam Ribulose-phosphate 3 epimerase family 87 285 IPR000056 GO:0005975(InterPro)|GO:0016857(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1270 K01783 - - csv:101219871 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1270 Clacu-Chr4:26783106 Clacu11g0847 Clacu-Chr11:8526102 4.40E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43