Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1271 ATGAACCGTACATTCAATTCATACCCAGATGAAAATTATGCAAATGTTAGGAGATTGATGAGGCAGACTGAGGATGATGATCACAAGAACCTATCGGACAAGGATTCTCACTGTGATTTGAAGAGCAACCACGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCAGATTGTAGATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTCCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTACTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTCAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGGCAAAGGCTGTGTTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTTCCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTATACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTCAAGTTGGTTGATCAATATGATTGA 1758 42.61 MNRTFNSYPDENYANVRRLMRQTEDDDHKNLSDKDSHCDLKSNHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKVGDLPTVIQPVDKLLSGLLSAKHGVDSCLSRYNSVAYQHKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCRYVVWISFSGLGNRILTLASTFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDEFSKFNQNSTNCYGKIMKNSMTPDSSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKAKAVLITSLSAGYFEKLRDIYWENPTVTGERISFFQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26788639 26791224 + ClG42_04g0127100.10 Clacu04g1271 247668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1271 585 Gene3D - 368 532 - -
Clacu04g1271 585 PANTHER FUCOSYLTRANSFERASE 2-RELATED 50 583 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Clacu04g1271 585 Pfam Xyloglucan fucosyltransferase 110 554 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Clacu04g1271 585 FunFam Galactoside 2-alpha-L-fucosyltransferase 189 240 - -
Clacu04g1271 585 Gene3D - 188 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1271 K13681 - - csv:101219153 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1271 Clacu-Chr4:26788639 Clacu07g1075 Clacu-Chr7:25306640 1.20E-142 dispersed
Clacu04g1271 Clacu-Chr4:26788639 Clacu05g2607 Clacu-Chr5:33872974 4.20E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2607 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 1.9e-158 556.2
Clacu04g1271 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 4.9e-151 531.6
Clacu05g2607 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.8e-166 582.8
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.1e-160 563.5
Clacu07g1075 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 4.9e-140 495.0
Clacu05g2607 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.2e-138 487.6
Clacu04g1271 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.6 1.8e-133 473.0
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.5e-192 667.5
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.1e-183 639.0
Clacu08g1022 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.8e-169 592.4
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Clacu04g1271 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 4.0e-188 654.8
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.1e-155 545.0
Clacu04g1271 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 4.3e-144 508.4
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.2e-149 526.9
Clacu04g1271 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 2.8e-138 489.2
Clacu05g2607 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.2e-153 538.1
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.4e-143 504.2
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.8e-190 661.4
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.5e-186 647.1
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Clacu04g1271 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 4.0e-188 654.8
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.2e-153 538.1
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.4e-143 504.2
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.2e-149 526.9
Clacu04g1271 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 2.8e-138 489.2
Clacu05g2607 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 1.9e-158 556.2
Clacu04g1271 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 4.9e-151 531.6
Clacu05g2607 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.8e-166 582.8
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.1e-160 563.5
Clacu07g1075 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 4.9e-140 495.0
Clacu05g2607 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.2e-138 487.6
Clacu04g1271 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.6 1.8e-133 473.0
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.1e-155 545.0
Clacu04g1271 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 4.3e-144 508.4
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.8e-190 661.4
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.5e-186 647.1
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.5e-192 667.5
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.1e-183 639.0
Clacu08g1022 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.8e-169 592.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29