Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1275 ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATAGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTAGTGATGGTCACTCACTTGTGTCTTACAATGTTGCCCCTTCTAGTTGGTCCTTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAA 723 47.58 MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGGACGYGNVYSADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKVITSDGHSLVSYNVAPSSWSFGQTFVGRQFP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26817804 26820312 + ClG42_04g0127500.10 Clacu04g1275 247672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1275 240 CDD DPBB_EXPA_N 28 142 - -
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Clacu04g1275 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Clacu04g1275 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Clacu04g1275 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Clacu04g1275 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 147 IPR007112 -
Clacu04g1275 240 FunFam Expansin 147 239 - -
Clacu04g1275 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Clacu04g1275 240 Pfam Lytic transglycolase 61 137 IPR009009 -
Clacu04g1275 240 SUPERFAMILY Barwin-like endoglucanases 25 165 IPR036908 -
Clacu04g1275 240 Gene3D - 145 239 IPR036749 -
Clacu04g1275 240 Gene3D - 16 143 IPR036908 -
Clacu04g1275 240 SMART dpbb_1 61 137 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1275 Clacu-Chr4:26817804 Clacu07g0524 Clacu-Chr7:6700707 5.50E-86 dispersed
Clacu04g1275 Clacu-Chr4:26817804 Clacu05g2616 Clacu-Chr5:33929896 2.60E-91 wgd
Clacu04g1275 Clacu-Chr4:26817804 Clacu06g1720 Clacu-Chr6:27843631 2.10E-93 wgd
Clacu04g1275 Clacu-Chr4:26817804 Clacu09g1856 Clacu-Chr9:33317282 5.70E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1275 - - - 0.0