Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1282 ATGTTGGATTCTAAAGATCCTACTATTAAGCTTTTTGGCCGTAATATTCCACTTTCCGAAGACGGGGAACCTCCGGCGATTCTTTCCCGCGACTTCCCTTCTCAGAAACATGCAGAACCAATAAAGGATGATGCTGTTGATGATCCTGAGAAACCTGTTGATGATTCAGATGATTCAAGAAATCTAGAGAGAGAGGAAGAGGCTAGCGTGAATCCCAAAACGCCATCTATAGATGAAGAAACTGCGACGCCTACTAATGGAGAACAAGAGAGTGAGAAACCTAATTCAGAGAAAACCCTAAAGAAGCCTGATAAATTGCTTCCATGTCCTCGTTGCAAAAGTATGGAGACAAAGTTCTGTTACTACAACAATTACAATGTAAATCAACCTCGCCATTTTTGTAAAGCTTGTCAAAGATACTGGACCGCCGGTGGGACTATGAGGAACGTACCGGTAGGAGCTGGTCGTCGGAAGAGCAAAAACTCTGCTTCTTATTACCGTCACATCACGATCTCTGAGGCTCTTGAAGCTGCTCGAATTGAGGCTCCAAATGGAACCCACAAACCAAAATTCATTGGCAACAATGGCAGAGTTCTCAGTTTCAATTTGGATGCACCGAGTTCTGATGCTGTGGTGGGCTCTGTTTTAAACCTTGCAGAAAACAGAGTTTTGAGTAATGGGGTAAAGAAGTTTGAAGAGAAAGGATCTGAAGGATGTGATAAAAGCTCGAGTTTGTCTTCTATGGCAGTTCAAAGTTCATCAGAATTGAAAATCAATGGCTTCCCTTCTCAGATTTCATGTCTTTCTGGAGTTCCATGGCCTTTTATTTGGAATTCATCAGTTCCACCACCAGCTTTTGGCCCTCCAGGATTTCCCTTGTCTTTTTTTCCAGCAGCTCCTTGGAACTGTGGGGTTCCAGGACCATGGAACACTCCATGGTTTTCACCACAACCTGAAAAATCTGTGCGTTCTGACTCTGAAGCTTCTTCAACACTGGGAAAGCATCAAAGAGACAATGAAACGGCCAAGGAAGATGCCATTTCAAGTAAAGAAGAGGGTGTTAAGCAGAGAAATGGACATGTCTTAACCCCAAAGACTTTAAGGATTGATGACCCAAGTGACGCTGCAAAAAGTTCCATATGGGCAACACTTGGGATAAAGAATGAATCAATCACTGGAGGAAAAAATCTGTTCAAAACCTTTCATCCCAAAGGCCATGAGAAGGTTCATGTTGCTGAAGCCTCATCAGTTTTGCAGGCAAATCCTGCAGCCTTGTCGAGATCTCTCGTCTTTCACGAGAGCTCTTGA 1308 43.43 MLDSKDPTIKLFGRNIPLSEDGEPPAILSRDFPSQKHAEPIKDDAVDDPEKPVDDSDDSRNLEREEEASVNPKTPSIDEETATPTNGEQESEKPNSEKTLKKPDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSASYYRHITISEALEAARIEAPNGTHKPKFIGNNGRVLSFNLDAPSSDAVVGSVLNLAENRVLSNGVKKFEEKGSEGCDKSSSLSSMAVQSSSELKINGFPSQISCLSGVPWPFIWNSSVPPPAFGPPGFPLSFFPAAPWNCGVPGPWNTPWFSPQPEKSVRSDSEASSTLGKHQRDNETAKEDAISSKEEGVKQRNGHVLTPKTLRIDDPSDAAKSSIWATLGIKNESITGGKNLFKTFHPKGHEKVHVAEASSVLQANPAALSRSLVFHESS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26848490 26850296 - ClG42_04g0128200.10 Clacu04g1282 247679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1282 435 MobiDBLite consensus disorder prediction 91 107 - -
Clacu04g1282 435 MobiDBLite consensus disorder prediction 330 358 - -
Clacu04g1282 435 MobiDBLite consensus disorder prediction 1 107 - -
Clacu04g1282 435 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu04g1282 435 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu04g1282 435 MobiDBLite consensus disorder prediction 74 90 - -
Clacu04g1282 435 PANTHER CYCLIC DOF FACTOR 2 1 435 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu04g1282 435 MobiDBLite consensus disorder prediction 35 73 - -
Clacu04g1282 435 MobiDBLite consensus disorder prediction 312 370 - -
Clacu04g1282 435 MobiDBLite consensus disorder prediction 314 329 - -
Clacu04g1282 435 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1282 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1282 Clacu-Chr4:26848490 Clacu10g1511 Clacu-Chr10:28373475 8.50E-77 dispersed
Clacu04g1282 Clacu-Chr4:26848490 Clacu05g2622 Clacu-Chr5:33953345 1.30E-69 wgd
Clacu04g1282 Clacu-Chr4:26848490 Clacu06g1723 Clacu-Chr6:27856622 2.30E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011465 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47555 PF02701 zf-Dof 3.80E-32 No_clan Clacu TF