Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1293 ATGGTAGAGGAAAACATAGTGGTGCTTTACGGGATGTGGGCTAGCCCTTTTGTTAAGAGGGTCGAACTCGCCCTCAAAATCAAAGCCATCCCTTTTGAATATGTGGAAGAAGATTTCCAAAACAAAAGCACAGAGCTTCTTAAATTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCACAATGGAAGACCCATTTGTGAATCAGCCGTAATTTTTGAGTACATAGAGGAAGTTTGGAACAACAATGGTCCTTCCCTTCTACCTCAACATCCCTACAAACGAGCCCAGATTCGATTCTGGGCCGATTTCGTTCAGAATCAGTTGTTCGATGGTCTACTTTTATCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATTAAAGACGTGAAAGAGAAGCTCAAAGTTGTTGAAGAACAGGGGCTGAAGAGTTTGCTGGTAGAGGGAAGTCGATTTGTGAATGGAGATGAACTTGGATATTTGGACATAGGGATGTTGACAGTGCTTGGAAGGTACAAGATTTATGAAGAGTTTTTTGGAGTGAAGATTGTGGAAGAAGAGGAGATCCCAATTGTTTTCTCATGGTTGAATAGATTGATAGAGCATCCAATTGCGAAGGAGGGAGCTGCTCCCAAAGAAAAGGTTTTGGGGCTTCTTCACATCGTCAGACAAAGATTTCTACACTCCCCTGCTGCTGCTTAA 705 42.55 MVEENIVVLYGMWASPFVKRVELALKIKAIPFEYVEEDFQNKSTELLKFNPVYKKVPVLVHNGRPICESAVIFEYIEEVWNNNGPSLLPQHPYKRAQIRFWADFVQNQLFDGLLLSMKTEGEAQEKAIKDVKEKLKVVEEQGLKSLLVEGSRFVNGDELGYLDIGMLTVLGRYKIYEEFFGVKIVEEEEIPIVFSWLNRLIEHPIAKEGAAPKEKVLGLLHIVRQRFLHSPAAA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26935821 26936601 - ClG42_04g0129300.10 Clacu04g1293 247690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1293 234 SFLD Main.3: Omega- and Tau-like 5 230 IPR045073 -
Clacu04g1293 234 Gene3D - 88 231 - -
Clacu04g1293 234 Gene3D Glutaredoxin 2 87 - -
Clacu04g1293 234 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Clacu04g1293 234 CDD GST_N_Tau 7 80 - -
Clacu04g1293 234 CDD GST_C_Tau 92 220 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu04g1293 234 SUPERFAMILY GST C-terminal domain-like 78 227 IPR036282 -
Clacu04g1293 234 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 218 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu04g1293 234 SUPERFAMILY Thioredoxin-like 7 109 IPR036249 -
Clacu04g1293 234 Coils Coil 121 141 - -
Clacu04g1293 234 FunFam Tau class glutathione S-transferase 1 88 - -
Clacu04g1293 234 SFLD Glutathione Transferase (cytosolic) 5 230 IPR040079 -
Clacu04g1293 234 Pfam Glutathione S-transferase, C-terminal domain 116 204 IPR004046 -
Clacu04g1293 234 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Clacu04g1293 234 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 219 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1293 K00799 - - csv:101203519 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1293 Clacu-Chr4:26935821 Clacu04g1295 Clacu-Chr4:26946108 2.00E-72 dispersed
Clacu04g1292 Clacu-Chr4:26934708 Clacu04g1293 Clacu-Chr4:26935821 4.10E-39 tandem
Clacu04g1293 Clacu-Chr4:26935821 Clacu04g1294 Clacu-Chr4:26937650 6.50E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75