Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1303 ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCCGGAGTGATGGGGTTCAACTCTGAAGCAATAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACTACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATATAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.06 MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAITNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26984901 26986727 + ClG42_04g0130300.10 Clacu04g1303 247700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1303 283 MobiDBLite consensus disorder prediction 246 283 - -
Clacu04g1303 283 Pfam TCP family transcription factor 50 150 IPR017887 -
Clacu04g1303 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 169 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu04g1303 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Clacu04g1303 283 MobiDBLite consensus disorder prediction 1 23 - -
Clacu04g1303 283 MobiDBLite consensus disorder prediction 46 62 - -
Clacu04g1303 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1303 Clacu-Chr4:26984901 Clacu11g1530 Clacu-Chr11:26442793 4.40E-34 dispersed
Clacu05g1532 Clacu-Chr5:19331729 Clacu04g1303 Clacu-Chr4:26984901 1.60E-29 transposed
Clacu04g1303 Clacu-Chr4:26984901 Clacu05g2640 Clacu-Chr5:34054604 4.70E-44 wgd
Clacu04g1303 Clacu-Chr4:26984901 Clacu06g1733 Clacu-Chr6:27941806 7.50E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47558 PF03634 TCP 7.80E-36 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1303 - - - 0.0