Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g1303 | ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCCGGAGTGATGGGGTTCAACTCTGAAGCAATAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACTACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATATAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA | 852 | 51.06 | MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAITNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26984901 | 26986727 | + | ClG42_04g0130300.10 | Clacu04g1303 | 247700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g1303 | 283 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
Clacu04g1303 | 283 | Pfam | TCP family transcription factor | 50 | 150 | IPR017887 | - | |
Clacu04g1303 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 42 | 169 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Clacu04g1303 | 283 | ProSiteProfiles | TCP domain profile. | 52 | 106 | IPR017887 | - | |
Clacu04g1303 | 283 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Clacu04g1303 | 283 | MobiDBLite | consensus disorder prediction | 46 | 62 | - | - | |
Clacu04g1303 | 283 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g1303 | Clacu-Chr4:26984901 | Clacu11g1530 | Clacu-Chr11:26442793 | 4.40E-34 | dispersed | |
Clacu05g1532 | Clacu-Chr5:19331729 | Clacu04g1303 | Clacu-Chr4:26984901 | 1.60E-29 | transposed | |
Clacu04g1303 | Clacu-Chr4:26984901 | Clacu05g2640 | Clacu-Chr5:34054604 | 4.70E-44 | wgd | |
Clacu04g1303 | Clacu-Chr4:26984901 | Clacu06g1733 | Clacu-Chr6:27941806 | 7.50E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47558 | PF03634 | TCP | 7.80E-36 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g1303 | - | - | - | 0.0 |