Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1318 ATGCGGGAACTTGGACAGGAAAATGGAGAGAAACGGGCGCAGGGGATAGTGGCGTGGTGGTATGAAGAGTGGTCGGGGCGGAAGGCCAATCACGTGAACTTCAGCCACTACCCGTTTATCTCGTTGTCCCGTTCAGCTCTCCATTTTCTTGTAGTGATCATGGGGAGGAAGAAGAGGACCGATGCTGGTGGTGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGTAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGTAGCACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGCCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGGTTTCCATCCAACAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGCAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGTGAACTGCCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTATGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTTGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCTGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGATTGTTTGCTAACAACCATTCTGATCGCCATGCAGTAGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACCTCCGATAGTGGGTCAATTAGCAGTGAGGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTACTGTTGA 3339 46.27 MRELGQENGEKRAQGIVAWWYEEWSGRKANHVNFSHYPFISLSRSALHFLVVIMGRKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHVARSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPASSVASSSSHPSSDTSSIDQQFQQVSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1112
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 27076494 27084005 + ClG42_04g0131800.10 Clacu04g1318 247715
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1318 1112 ProSiteProfiles PAZ domain profile. 451 564 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu04g1318 1112 FunFam Protein argonaute-2 443 569 - -
Clacu04g1318 1112 Gene3D - 809 1112 IPR036397 GO:0003676(InterPro)
Clacu04g1318 1112 SUPERFAMILY Ribonuclease H-like 735 1061 IPR012337 -
Clacu04g1318 1112 MobiDBLite consensus disorder prediction 185 236 - -
Clacu04g1318 1112 FunFam protein argonaute 10-like 809 1112 - -
Clacu04g1318 1112 MobiDBLite consensus disorder prediction 59 246 - -
Clacu04g1318 1112 SMART Piwi_a_2 740 1061 IPR003165 GO:0003676(InterPro)
Clacu04g1318 1112 Pfam Mid domain of argonaute 647 722 IPR032473 -
Clacu04g1318 1112 Gene3D paz domain 443 568 - -
Clacu04g1318 1112 Pfam Argonaute linker 2 domain 590 636 IPR032472 -
Clacu04g1318 1112 CDD PAZ_argonaute_like 449 563 - -
Clacu04g1318 1112 SMART PAZ_2_a_3 454 586 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu04g1318 1112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 243 1067 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Clacu04g1318 1112 Pfam Argonaute linker 1 domain 399 448 IPR014811 -
Clacu04g1318 1112 SUPERFAMILY PAZ domain 257 606 IPR036085 GO:0005515(InterPro)
Clacu04g1318 1112 Pfam PAZ domain 453 580 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Clacu04g1318 1112 Gene3D - 628 803 - -
Clacu04g1318 1112 MobiDBLite consensus disorder prediction 1065 1085 - -
Clacu04g1318 1112 SMART DUF1785_2 397 449 IPR014811 -
Clacu04g1318 1112 CDD Piwi_ago-like 608 1060 IPR045246 -
Clacu04g1318 1112 FunFam Argonaute 10 628 803 - -
Clacu04g1318 1112 ProSiteProfiles Piwi domain profile. 740 1061 IPR003165 GO:0003676(InterPro)
Clacu04g1318 1112 Pfam Piwi domain 741 1060 IPR003165 GO:0003676(InterPro)
Clacu04g1318 1112 Pfam N-terminal domain of argonaute 255 388 IPR032474 -
Clacu04g1318 1112 Pfam Glycine-rich region of argonaut 126 236 IPR024357 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1468 Clacu-Chr1:26759086 Clacu04g1318 Clacu-Chr4:27076494 2.80E-300 dispersed
Clacu04g1318 Clacu-Chr4:27076494 Clacu05g0549 Clacu-Chr5:4594655 0.00E+00 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1318 K11593 - csv:101212130 1868.2