Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g1318 | ATGCGGGAACTTGGACAGGAAAATGGAGAGAAACGGGCGCAGGGGATAGTGGCGTGGTGGTATGAAGAGTGGTCGGGGCGGAAGGCCAATCACGTGAACTTCAGCCACTACCCGTTTATCTCGTTGTCCCGTTCAGCTCTCCATTTTCTTGTAGTGATCATGGGGAGGAAGAAGAGGACCGATGCTGGTGGTGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGTAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGTAGCACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGCCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGGTTTCCATCCAACAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGCAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGTGAACTGCCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTATGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTTGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCTGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGATTGTTTGCTAACAACCATTCTGATCGCCATGCAGTAGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACCTCCGATAGTGGGTCAATTAGCAGTGAGGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTACTGTTGA | 3339 | 46.27 | MRELGQENGEKRAQGIVAWWYEEWSGRKANHVNFSHYPFISLSRSALHFLVVIMGRKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHVARSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPASSVASSSSHPSSDTSSIDQQFQQVSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRVMFYC | 1112 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27076494 | 27084005 | + | ClG42_04g0131800.10 | Clacu04g1318 | 247715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g1318 | 1112 | ProSiteProfiles | PAZ domain profile. | 451 | 564 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Clacu04g1318 | 1112 | FunFam | Protein argonaute-2 | 443 | 569 | - | - | |
Clacu04g1318 | 1112 | Gene3D | - | 809 | 1112 | IPR036397 | GO:0003676(InterPro) | |
Clacu04g1318 | 1112 | SUPERFAMILY | Ribonuclease H-like | 735 | 1061 | IPR012337 | - | |
Clacu04g1318 | 1112 | MobiDBLite | consensus disorder prediction | 185 | 236 | - | - | |
Clacu04g1318 | 1112 | FunFam | protein argonaute 10-like | 809 | 1112 | - | - | |
Clacu04g1318 | 1112 | MobiDBLite | consensus disorder prediction | 59 | 246 | - | - | |
Clacu04g1318 | 1112 | SMART | Piwi_a_2 | 740 | 1061 | IPR003165 | GO:0003676(InterPro) | |
Clacu04g1318 | 1112 | Pfam | Mid domain of argonaute | 647 | 722 | IPR032473 | - | |
Clacu04g1318 | 1112 | Gene3D | paz domain | 443 | 568 | - | - | |
Clacu04g1318 | 1112 | Pfam | Argonaute linker 2 domain | 590 | 636 | IPR032472 | - | |
Clacu04g1318 | 1112 | CDD | PAZ_argonaute_like | 449 | 563 | - | - | |
Clacu04g1318 | 1112 | SMART | PAZ_2_a_3 | 454 | 586 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Clacu04g1318 | 1112 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 243 | 1067 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Clacu04g1318 | 1112 | Pfam | Argonaute linker 1 domain | 399 | 448 | IPR014811 | - | |
Clacu04g1318 | 1112 | SUPERFAMILY | PAZ domain | 257 | 606 | IPR036085 | GO:0005515(InterPro) | |
Clacu04g1318 | 1112 | Pfam | PAZ domain | 453 | 580 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Clacu04g1318 | 1112 | Gene3D | - | 628 | 803 | - | - | |
Clacu04g1318 | 1112 | MobiDBLite | consensus disorder prediction | 1065 | 1085 | - | - | |
Clacu04g1318 | 1112 | SMART | DUF1785_2 | 397 | 449 | IPR014811 | - | |
Clacu04g1318 | 1112 | CDD | Piwi_ago-like | 608 | 1060 | IPR045246 | - | |
Clacu04g1318 | 1112 | FunFam | Argonaute 10 | 628 | 803 | - | - | |
Clacu04g1318 | 1112 | ProSiteProfiles | Piwi domain profile. | 740 | 1061 | IPR003165 | GO:0003676(InterPro) | |
Clacu04g1318 | 1112 | Pfam | Piwi domain | 741 | 1060 | IPR003165 | GO:0003676(InterPro) | |
Clacu04g1318 | 1112 | Pfam | N-terminal domain of argonaute | 255 | 388 | IPR032474 | - | |
Clacu04g1318 | 1112 | Pfam | Glycine-rich region of argonaut | 126 | 236 | IPR024357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1468 | Clacu-Chr1:26759086 | Clacu04g1318 | Clacu-Chr4:27076494 | 2.80E-300 | dispersed | |
Clacu04g1318 | Clacu-Chr4:27076494 | Clacu05g0549 | Clacu-Chr5:4594655 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g1318 | K11593 | - | csv:101212130 | 1868.2 |