Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1333 ATGGACTTTGGTGGTGGCTCTGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGGAAGAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGGCTCGAGGCAATGTTTAAAGAATGCCCCCACCCGGATGAGAAGCAGAGGTTGCAGTTAAGTAGAGAGTTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCACAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTCATTTGTCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTCGACGAGCACAAACTTCGAATCGAAAACTCCCATTTGAAAGAAGAGCTTGATAGATTATCTAGCATTGCAGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTTTCCTCCTTAGAGCTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGCCCTTCTCTTGATCTTGATTTGCTTCCTGCAAGTTCTACAAGTGTTACCAGTTTGCCATACCTCCACCCAATTCACCTCTCCTCTGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGCTACTCAGGCTTTCTCAAACTAATGAGCCATTTTGGATGAAATCACCAACTGATGGTCGTGACCTTCTTGACCTTGAAACCTATGAACAGGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTCCATTTTCGAACCGAAGCATCTAGAGATTCAGGCGTCGTGATCATGAGTAGTGCAGCATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCAATTGCAAGAACAATTGAAGTTATATCGTCCGGAATGTTGGGAAGTCAGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCATTTTTACGTCCTCCGATATTGTCAACAAATTGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAATATCCCCAGAGAAAACCAAATAGTTTCTCATTCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATACAGGACATGCCTAATGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGGCTGAAAGGTTTGCTTGTTTAATGGTGACCGGTAGTTCCAATCAGGATCTTAGCGGAGTAATTCCATCGCCAGAAGGAAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTTTGTGCTAGTATCAGCACATCCCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTACCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATATCCAACGGATCTCATCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGAGAGGACCCATCAAGTATCCCTTTGCTGCCCTCAGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCTCAGATGTGAACAACAGATCAGGAGGCTCTCTGGTGACGGTTGCATTTCAGATACTAGTGAGCAGCTTGCCGTCTGGGAAGCTGAACTTGGAGTCAGTCACAACAGTTAATAACCTTATCAGCACCACTGTCCACCAAATCAAGACAGCCTTAAATTGTCATAGTTCTTGA 2118 46.18 MDFGGGSGWDNDSSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENSHLKEELDRLSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLPASSTSVTSLPYLHPIHLSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPTDGRDLLDLETYEQAFPRPNTPLKNLHFRTEASRDSGVVIMSSAALVDIFMDSNKWTELFPTIVSIARTIEVISSGMLGSQNGSLQLMYQELQLLSPLVPTRHFYVLRYCQQIEQGVWAVVDVSYNIPRENQIVSHSQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMAERFACLMVTGSSNQDLSGVIPSPEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVYPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSSDVNNRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSS 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27193784 27196788 + ClG42_04g0133300.10 Clacu04g1333 247730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1333 705 SMART HOX_1 19 82 IPR001356 GO:0003677(InterPro)
Clacu04g1333 705 CDD homeodomain 20 79 IPR001356 GO:0003677(InterPro)
Clacu04g1333 705 MobiDBLite consensus disorder prediction 1 26 - -
Clacu04g1333 705 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677(InterPro)
Clacu04g1333 705 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu04g1333 705 CDD START_ArGLABRA2_like 213 442 - -
Clacu04g1333 705 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 702 IPR042160 -
Clacu04g1333 705 Pfam START domain 219 442 IPR002913 GO:0008289(InterPro)
Clacu04g1333 705 Gene3D - 9 94 - -
Clacu04g1333 705 SUPERFAMILY Homeodomain-like 7 78 IPR009057 -
Clacu04g1333 705 SMART START_1 218 443 IPR002913 GO:0008289(InterPro)
Clacu04g1333 705 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289(InterPro)
Clacu04g1333 705 SUPERFAMILY Bet v1-like 212 444 - -
Clacu04g1333 705 MobiDBLite consensus disorder prediction 636 655 - -
Clacu04g1333 705 SUPERFAMILY Bet v1-like 464 697 - -
Clacu04g1333 705 Gene3D - 217 443 IPR023393 -
Clacu04g1333 705 Pfam Homeodomain 21 76 IPR001356 GO:0003677(InterPro)
Clacu04g1333 705 FunFam Homeobox-leucine zipper protein HDG1 8 94 - -
Clacu04g1333 705 FunFam Homeobox-leucine zipper protein GLABRA 2 218 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1333 Clacu-Chr4:27193784 Clacu05g1230 Clacu-Chr5:11654153 3.00E-209 dispersed
Clacu04g1333 Clacu-Chr4:27193784 Clacu06g0005 Clacu-Chr6:307312 1.00E-188 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47563 PF01852 START 2.80E-49 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1333 K09338 - csv:101215660 1363.59