Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1335 ATGCAAGGCGACGCGAGGAATCAATTTCCATTTGATTTGACCTCACCTCTACAAAACAACAGTGTGGTGCCACATCATTTCTTCTCCACTCAACATCTGTCCATCACCTTCAAGTTTTCTCTCAATAATGAATGCTTCATTTCAATTACTTTTCCATTTCTTTGTGTCGTCATATTACTGCAGACCTTTGCCTCGAAGTTGTATGGATCAAAGTGTTGTGAAAACTGCCCTACATTGAGGAACGTGGTGGGACCCGAAGCCGACGTGACGTGTCCTTTGGTTGCTTCAGGGGAGGATGTAGTTAAACTTGAACTTATATTTCAACCCTTCTTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGTTCTCCTCCTCCCAAGTTCAAACTAGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACTTGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTACGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTCATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCAACAGAGTCTTGAAGGAAGTCGAGGCACTACCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTGTGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTTCGCGTCGTCAGCAACTTCTCTGCTCAAGCCTCAAGCGATTCTATTGTCACACTGAAGAATGGACGCATTAACTCTGAGGAGAAAGTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCATCTGATGAAGTGGGAGAAGAAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCTTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCTTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAATGACATGCACTGCAGTTTTCATTAATAATAAGCACAAGATAACTACAGGTCTTTTTACAGAGAACACCATTGTTGTAGCAGAAGGAGAGATGCTTGTGGAGGGTATTTTTCAGGTTGTTACATGTGGATTTCCTCCACTAGAGGAGAGGGACAAGTCTCTTAAATTGCTAGCAGGCCAGGACTTCTTTGGAGGTGGTGCTCTACCAAAAGAGGAGACTCTCAGGCTTGCAGATCTGGAGAAGAAAGCTTTTAATGATATGTTTGTCATACTTTCTGACATTTGGTTGGATAGTGAAGAGGCCATGGGAAAACTGGAGACCATACTTGATGGTTTCGAGAATGTGGAAGTGGTTCCTTCCTTATTTGTTTTGATGGGAAATTTTTGTTCCCGTCCATGCAATCTTGCCTTTAATTCTTTCTCGAGTCTCAGACTACAGTTTGGTAAGTTAGGAAAAATGATAGCAGCTCATCCAAGATTACAAGAGCATAGCAAGTTTCTTTTTATTCCTGGTCCAGATGATGCAGGACCATCAACCGTTCTACCTAGGTGTGCTTTGCCGAAGTATTTAACCGAAGAGCTTCAGATGCACGTCCCAAATGCCATTTTCTCAAGTAACCCTTGCAGGGTCAGATTCTACACCCAGGAAATTGTATTTTTCCGACAAGACCTTCTTTATAGAATGCGCCGTTCCTGTCTCATACCACCTTCCACAGAAGAAACAAGTGATCCTTTCGAGCATCTTGTTGCGACTATAACTCATCAAAGTCATCTCTGCCCTCTTCCTCTGGTTATTCAACCAATTATCTGGAATTACGACCACTGTCTTCATCTATACCCTACTCCTCATGTGATAGTTTTGGGGGATAGAAGTAAGCAACAAGCATTCAAATACACAGGAATCACTTGCTTTAATCCTGGTTCCTTCACAAATGATAGCACTTTTGTGGCATATCGTCCTTGCAATCAAGAAGTTGAACTGTCTGCCTTGTTAACCGAAAGGAGCGTTAGAAGAATGAGGGAAATGTTTTCAACATCCAACTTTGGTAAATGTGGTTGTCCATACTTTTTGAGAGTTGCTGAAGTGTAG 3402 44.62 MQGDARNQFPFDLTSPLQNNSVVPHHFFSTQHLSITFKFSLNNECFISITFPFLCVVILLQTFASKLYGSKCCENCPTLRNVVGPEADVTCPLVASGEDVVKLELIFQPFFADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDINRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLVDGRRTVCFLAGAVSVCDFVRVVSNFSAQASSDSIVTLKNGRINSEEKVKSSILDKDAVHRVISIMLASDEVGEESPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSFPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGRKWVMGMTCTAVFINNKHKITTGLFTENTIVVAEGEMLVEGIFQVVTCGFPPLEERDKSLKLLAGQDFFGGGALPKEETLRLADLEKKAFNDMFVILSDIWLDSEEAMGKLETILDGFENVEVVPSLFVLMGNFCSRPCNLAFNSFSSLRLQFGKLGKMIAAHPRLQEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQMHVPNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNPGSFTNDSTFVAYRPCNQEVELSALLTERSVRRMREMFSTSNFGKCGCPYFLRVAEV 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27208034 27218670 + ClG42_04g0133500.10 Clacu04g1335 247732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1335 1133 Gene3D - 868 1100 - -
Clacu04g1335 1133 SUPERFAMILY PLP-dependent transferases 118 549 IPR015424 -
Clacu04g1335 1133 PANTHER GLUTAMATE DECARBOXYLASE 117 597 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Clacu04g1335 1133 Gene3D - 170 464 IPR015421 -
Clacu04g1335 1133 FunFam Glutamate decarboxylase 112 169 - -
Clacu04g1335 1133 CDD DOPA_deC_like 163 543 - -
Clacu04g1335 1133 Gene3D - 465 552 - -
Clacu04g1335 1133 NCBIfam glutamate decarboxylase 121 548 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Clacu04g1335 1133 Gene3D - 109 169 - -
Clacu04g1335 1133 Pfam DNA polymerase alpha/epsilon subunit B 859 1064 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Clacu04g1335 1133 FunFam Glutamate decarboxylase 170 464 - -
Clacu04g1335 1133 Pfam Pyridoxal-dependent decarboxylase conserved domain 141 485 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Clacu04g1335 1133 FunFam Glutamate decarboxylase 465 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0862 Clacu-Chr1:9828393 Clacu04g1335 Clacu-Chr4:27208034 3.50E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1335 K01580 - csv:101210903 937.947