Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1340 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGCCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTATGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACGACGACGACAACGACAACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1356 51.33 MIGNTATSASPVLPSSEPYSCLENGNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27270805 27272814 + ClG42_04g0134000.10 Clacu04g1340 247737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1340 451 FunFam protein indeterminate-domain 12-like 40 108 - -
Clacu04g1340 451 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Clacu04g1340 451 Gene3D Classic Zinc Finger 39 101 - -
Clacu04g1340 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 389 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu04g1340 451 Gene3D Classic Zinc Finger 117 187 - -
Clacu04g1340 451 MobiDBLite consensus disorder prediction 1 48 - -
Clacu04g1340 451 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Clacu04g1340 451 MobiDBLite consensus disorder prediction 1 34 - -
Clacu04g1340 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Clacu04g1340 451 MobiDBLite consensus disorder prediction 202 221 - -
Clacu04g1340 451 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Clacu04g1340 451 Coils Coil 318 380 - -
Clacu04g1340 451 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Clacu04g1340 451 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 199 - -
Clacu04g1340 451 SMART c2h2final6 102 132 IPR013087 -
Clacu04g1340 451 SMART c2h2final6 138 165 IPR013087 -
Clacu04g1340 451 SMART c2h2final6 61 83 IPR013087 -
Clacu04g1340 451 CDD ATP-synt_Fo_b 314 395 - -
Clacu04g1340 451 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0683 Clacu-Chr1:7468551 Clacu04g1340 Clacu-Chr4:27270805 8.30E-92 dispersed
Clacu04g1093 Clacu-Chr4:25165946 Clacu04g1340 Clacu-Chr4:27270805 1.30E-110 dispersed
Clacu04g1340 Clacu-Chr4:27270805 Clacu08g1684 Clacu-Chr8:26474575 3.70E-59 dispersed
Clacu04g1340 Clacu-Chr4:27270805 Clacu01g2001 Clacu-Chr1:31947302 2.80E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47565 PF00096 zf-C2H2 0.0043 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1340 K25871 - csv:101209426 743.421