Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g1340 | ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGCCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTATGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACGACGACGACAACGACAACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA | 1356 | 51.33 | MIGNTATSASPVLPSSEPYSCLENGNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN | 451 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27270805 | 27272814 | + | ClG42_04g0134000.10 | Clacu04g1340 | 247737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g1340 | 451 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Clacu04g1340 | 451 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Clacu04g1340 | 451 | Gene3D | Classic Zinc Finger | 39 | 101 | - | - | |
Clacu04g1340 | 451 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 389 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Clacu04g1340 | 451 | Gene3D | Classic Zinc Finger | 117 | 187 | - | - | |
Clacu04g1340 | 451 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Clacu04g1340 | 451 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Clacu04g1340 | 451 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Clacu04g1340 | 451 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Clacu04g1340 | 451 | MobiDBLite | consensus disorder prediction | 202 | 221 | - | - | |
Clacu04g1340 | 451 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
Clacu04g1340 | 451 | Coils | Coil | 318 | 380 | - | - | |
Clacu04g1340 | 451 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 84 | IPR036236 | - | |
Clacu04g1340 | 451 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 199 | - | - | |
Clacu04g1340 | 451 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Clacu04g1340 | 451 | SMART | c2h2final6 | 138 | 165 | IPR013087 | - | |
Clacu04g1340 | 451 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Clacu04g1340 | 451 | CDD | ATP-synt_Fo_b | 314 | 395 | - | - | |
Clacu04g1340 | 451 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0683 | Clacu-Chr1:7468551 | Clacu04g1340 | Clacu-Chr4:27270805 | 8.30E-92 | dispersed | |
Clacu04g1093 | Clacu-Chr4:25165946 | Clacu04g1340 | Clacu-Chr4:27270805 | 1.30E-110 | dispersed | |
Clacu04g1340 | Clacu-Chr4:27270805 | Clacu08g1684 | Clacu-Chr8:26474575 | 3.70E-59 | dispersed | |
Clacu04g1340 | Clacu-Chr4:27270805 | Clacu01g2001 | Clacu-Chr1:31947302 | 2.80E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47565 | PF00096 | zf-C2H2 | 0.0043 | CL0361 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g1340 | K25871 | - | csv:101209426 | 743.421 |