Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g1346 ATGGAAACCGGGTCAGAAAAACAGCTTACCTCTTTCACTGGGACATTAGATTTCAAAACAAAGCTCCACATTAACAAACAGATGGACATGATTCATGGCAATATTCGGTGCTCTGTTGGAAATGGACAATCCACATCCTTTTGGCTTGACCATTGGACCACCGAAGCTCTCCACAAGGTTTTTCCCAAGGCCTGCACCGATTCTGAACACTTCCTCCATACCGCAGTTAACACTAGGAACGCGGTTCCTATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCTGATGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCATCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATCCCAGCAGCAGCAGCTTCAGAGGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCCTCGAAGTCTGACCCAATTTCCGGCTTCAACTTGGGGCCGAAGGCCAAGAAGTCGGCCGATGTGAAAGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCCCTTGGGCTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTCTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCTAGCAATCTTTCCAGGAATTGCGGCGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGTCAGAAAAGATTGGGTTTTCAGGAAAATGTTAAAAGCTATATTCGCGATGCTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAGCGGAGTCCAAATTTGTTAGGACAGCCTCGAGTACAGAATGTCGCTTCATCCAATGAAGCTGGATGCTATGAATCATCATGGGGATGTTCTGACGGATTAAGAAATTTAGATTTCTGTACGCCAGAGTCCTCTTATGATTGTGAAAATCCCAAGGAGTCTGAATCTCCGCGCTTTCAAGCTATACTGCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCCGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAAAAAAATGCCGATGCTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCTATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAGGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGAATTGCTCCAGCTATGGTAAGGGAAGTGAAAAGTTCTAAGACAACTTCTTCCAGGAAGTCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTCTCAACATCTCCCGATGATACTTCGAAGAACTTGGTATCTCCTACTGGCAGAGACCGGTGGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTTTGAACATGTCAAAAATCAGGATGGGTGTTTCTGAAGCTGATTTGCCTGCTGCTAAGGTTTCTGAGCTTCCTCCGCCCAGAGATTCTCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAAATTCCAACTGCAAATGTGGAAGATCATTCAAGAATTTGCGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAAATGATCGAGTCTTTTACGCAAAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCTAATTCTAGCGTGACTGAAGAATCAGATATTTCCCCAAAACACAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCCTTATTAACACCAAGGACCAGTCAGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACATGATGATCTTACGCAGATCAGTGATCTTGCAGATATTGCACGCTATTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATACCTGCTAACATGCCTTGAGGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCGCTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACACCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCAATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTCCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTCGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCCTTGTTGAGAAATTTGGGCTGCTTAGATGAAGATGTTGCTCGCGTATATATCGCAGAAGTTGTTCTTGCTTTGGAGTATCTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGATTATTTGGCACCAGAGATACTATTGGGAACTGGACACGGCGCCACAGCTGACTGGTGGTCTGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCGCCCTTCAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCGAGATTTAATTGATCGATTATTGACAGAAGATCCTAACCAGCGACTTGGAGCTATAGGCGCATCAGAGGTGAAGCAGCATATGTTCTTCAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAACCATTCAGATGGTCATGTCTATCCACACAGTGAACTTGAAGATTCGAGTGATGCCGACAGCTTAAGTGGTGATAGTAGTTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA 4128 43.82 METGSEKQLTSFTGTLDFKTKLHINKQMDMIHGNIRCSVGNGQSTSFWLDHWTTEALHKVFPKACTDSEHFLHTAVNTRNAVPMVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDEPQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSDPISGFNLGPKAKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSSGGKREAASQKRLGFQENVKSYIRDASNSDNMPIGNAPSTERSPNLLGQPRVQNVASSNEAGCYESSWGCSDGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNADAHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIAPAMVREVKSSKTTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRWASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMSKIRMGVSEADLPAAKVSELPPPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARYSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDARDLIDRLLTEDPNQRLGAIGASEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDGHVYPHSELEDSSDADSLSGDSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPNHDA 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27372354 27418303 + ClG42_04g0134600.10 Clacu04g1346 247743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 1297 1331 - -
Clacu04g1346 1375 Coils Coil 719 739 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 573 593 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 129 146 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 233 264 - -
Clacu04g1346 1375 PANTHER SERINE/THREONINE-PROTEIN KINASE 668 1350 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu04g1346 1375 CDD STKc_MAST_like 971 1259 - -
Clacu04g1346 1375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1084 1096 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g1346 1375 Pfam Protein kinase domain 966 1254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 233 305 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 147 161 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 279 305 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 738 761 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 535 677 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 615 629 - -
Clacu04g1346 1375 SMART serkin_6 965 1254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1346 1375 SUPERFAMILY Protein kinase-like (PK-like) 962 1292 IPR011009 -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 737 771 - -
Clacu04g1346 1375 Gene3D Transferase(Phosphotransferase) domain 1 1049 1272 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 93 113 - -
Clacu04g1346 1375 FunFam probable serine/threonine protein kinase IREH1 963 1052 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 545 560 - -
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 93 193 - -
Clacu04g1346 1375 Gene3D Phosphorylase Kinase; domain 1 963 1283 - -
Clacu04g1346 1375 ProSiteProfiles AGC-kinase C-terminal domain profile. 1255 1358 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1346 1375 Coils Coil 398 418 - -
Clacu04g1346 1375 ProSiteProfiles Protein kinase domain profile. 965 1254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g1346 1375 MobiDBLite consensus disorder prediction 805 827 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0531 Clacu-Chr1:5258972 Clacu04g1346 Clacu-Chr4:27372354 0.00E+00 dispersed
Clacu04g1346 Clacu-Chr4:27372354 Clacu06g0711 Clacu-Chr6:8302975 5.20E-72 dispersed
Clacu04g1346 Clacu-Chr4:27372354 Clacu05g1967 Clacu-Chr5:28808871 1.40E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73525 PF00069 Pkinase 1.60E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g1346 K08789 - csv:101214945 2372.43