Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu05g0009 | ATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGAGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGAGTTGCCCGTCAACAGTGGTGGTTGGATGTTGTCGGAGTTGAGCGTCATAGGTGGTCATCAACTCGAGGTAGTTGCCAGAGTTGGCCATCAGGGTCGAAGGGAATTAGGGTTAGGCGACGCCAAATCCAGTTGCACCTATAAAATCCCTTTTACGCATCAACCCGCTTCAACTGCGGTCTCGGCGTCTCCCACTACACAGTTTGAAGAGAAGCATAGCTCAGCAGAACACGCCGGTCCACAAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTTCAGAGAGGCCTGGTTGGAGAGATCATCAGTAGGTTTGAGAAGAAGGGCTTTTCTCTAAGAGGTTTGAAACTCATGTCTGTGGATCGTGCTTTTGCTGAGAATCATTACTCTGATCTTGCTGGAAAGCCCTTTTTCAATGGATTGATTGAATACATAATTTCTGGCCCCGTCGTTGCAATGATCTGGGAGGGGAAAAATGTTGTAGCAACTGGTAGGAAGATCATCGGAGCCACGAAGCCAGTAGATTCTGATGTGGGAACCATCCGTGGTGACTATGCAATTGATGTTGGCAGGAACATCATTCATGGAAGTGACTCGGTGGAGAGTGCAAGGAAGGAAATTGCTCTGTGGTTCCCTGAAGGTCCAGTTTCCTGGCAGAGCAACCTTCATTCCTGGATCTACGAGTGA | 1110 | 49.28 | MPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEELPVNSGGWMLSELSVIGGHQLEVVARVGHQGRRELGLGDAKSSCTYKIPFTHQPASTAVSASPTTQFEEKHSSAEHAGPQKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFSLRGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSDVGTIRGDYAIDVGRNIIHGSDSVESARKEIALWFPEGPVSWQSNLHSWIYE | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 317813 | 323848 | + | ClG42_05g0000900.10 | Clacu05g0009 | 247756 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu05g0009 | 369 | Hamap | Nucleoside diphosphate kinase [ndk]. | 222 | 357 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | PANTHER | NUCLEOSIDE DIPHOSPHATE KINASE | 212 | 369 | - | GO:0004550(PANTHER) | |
| Clacu05g0009 | 369 | SUPERFAMILY | WRKY DNA-binding domain | 79 | 139 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu05g0009 | 369 | PRINTS | Nucleoside diphosphate kinase signature | 333 | 352 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | PRINTS | Nucleoside diphosphate kinase signature | 269 | 288 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | PRINTS | Nucleoside diphosphate kinase signature | 289 | 306 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | PRINTS | Nucleoside diphosphate kinase signature | 310 | 326 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | PRINTS | Nucleoside diphosphate kinase signature | 225 | 247 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Clacu05g0009 | 369 | SUPERFAMILY | Nucleoside diphosphate kinase, NDK | 222 | 369 | IPR036850 | - | |
| Clacu05g0009 | 369 | MobiDBLite | consensus disorder prediction | 7 | 60 | - | - | |
| Clacu05g0009 | 369 | FunFam | WRKY transcription factor 57 | 73 | 144 | - | - | |
| Clacu05g0009 | 369 | Gene3D | - | 221 | 369 | IPR036850 | - | |
| Clacu05g0009 | 369 | FunFam | Nucleoside diphosphate kinase | 219 | 369 | - | - | |
| Clacu05g0009 | 369 | Gene3D | WRKY domain | 74 | 139 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu05g0009 | 369 | CDD | NDPk_I | 223 | 352 | - | - | |
| Clacu05g0009 | 369 | SMART | WRKY_cls | 87 | 143 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu05g0009 | 369 | ProSiteProfiles | WRKY domain profile. | 82 | 139 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu05g0009 | 369 | SMART | ndk_5 | 222 | 359 | IPR034907 | - | |
| Clacu05g0009 | 369 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Clacu05g0009 | 369 | Pfam | WRKY DNA -binding domain | 88 | 139 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Clacu05g0009 | 369 | Pfam | Nucleoside diphosphate kinase | 223 | 354 | IPR034907 | - | |
| Clacu05g0009 | 369 | ProSitePatterns | Nucleoside diphosphate kinases active site. | 333 | 341 | IPR023005 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g0350 | Clacu-Chr3:3961083 | Clacu05g0009 | Clacu-Chr5:317813 | 8.40E-52 | dispersed | |
| Clacu05g0009 | Clacu-Chr5:317813 | Clacu07g1161 | Clacu-Chr7:26280193 | 5.60E-45 | dispersed | |
| Clacu05g0009 | Clacu-Chr5:317813 | Clacu02g0102 | Clacu-Chr2:1091435 | 3.20E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47569 | PF00334 | NDK | 2.20E-52 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu05g0009 | K00940 | - | csv:101217169 | 295.819 |