Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0012 ATGAAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTACGAGACGTGGGAAGATCAATTGGACAAGGATTTCAAGATTCAGAAGTTTCTGCACCTATACGGACGTCAAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAAGCTAAGCGTGATGTCACTTTAAAGGGCAGTAGCTCTTTGATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCTGTGGATATGGATCTGATGAGAACTGTTTATGTACCCATAGGGCAAAATAAGCCTGATCCCGGCTGCTTGATGAAGAGCTTGTCCGTTAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCTGCTGTTCCCTCCCCTACAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCTTTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGTATTGAAAGGAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTAGTTGGAGTAACATCACAGGAAGTGCTAATAAGCCTCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGATGTGGCGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTCTATGCTGCAGAGGTTTTACTGGCCCTCGAATATCTCCACATGCTTGGAGTTGTCTATAGGGACTTGAAACCGGAGAATGTACTGGTTCGTGATGACGGCCACATAATGCTCTCAGATTTCGACCTTTCACTAAGATGTGCAGTCTCACCCACCCTGATAAAAACCTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCAGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATCTGGGCTTGCAATCCAGTGCTCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCGTTCAAGGGATCCGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCGGAGTCTCCGGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAGCATCGGCTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCGGAACTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGGAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2184 46.47 MKRIPESKALPLLLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEVSAPIRTSKGKSSFLGQEEAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSLSVKGPFLEDLSIRVPAKKPSPAVPSPTESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 330238 334761 - ClG42_05g0001200.10 Clacu05g0012 247759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0012 727 MobiDBLite consensus disorder prediction 269 308 - -
Clacu05g0012 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Clacu05g0012 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0012 727 MobiDBLite consensus disorder prediction 68 86 - -
Clacu05g0012 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0012 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0012 727 MobiDBLite consensus disorder prediction 191 214 - -
Clacu05g0012 727 FunFam serine/threonine-protein kinase D6PK-like 562 685 - -
Clacu05g0012 727 MobiDBLite consensus disorder prediction 193 207 - -
Clacu05g0012 727 FunFam Serine/threonine-protein kinase D6PK-like 333 418 - -
Clacu05g0012 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Clacu05g0012 727 PANTHER FLIPPASE KINASE 1-RELATED 211 688 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu05g0012 727 MobiDBLite consensus disorder prediction 68 120 - -
Clacu05g0012 727 MobiDBLite consensus disorder prediction 269 312 - -
Clacu05g0012 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Clacu05g0012 727 CDD STKc_phototropin_like 333 686 - -
Clacu05g0012 727 SMART serkin_6 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0012 727 FunFam serine/threonine-protein kinase D6PK-like 419 486 - -
Clacu05g0012 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0012 727 Gene3D Transferase(Phosphotransferase) domain 1 562 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2251 Clacu-Chr2:35616986 Clacu05g0012 Clacu-Chr5:330238 1.30E-148 dispersed
Clacu02g2252 Clacu-Chr2:35633346 Clacu05g0012 Clacu-Chr5:330238 3.90E-114 dispersed
Clacu04g1038 Clacu-Chr4:24662095 Clacu05g0012 Clacu-Chr5:330238 1.60E-147 dispersed
Clacu05g0012 Clacu-Chr5:330238 Clacu10g1374 Clacu-Chr10:26810597 9.50E-182 dispersed
Clacu05g0012 Clacu-Chr5:330238 Clacu01g2192 Clacu-Chr1:33290963 2.70E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73526 PF00069 Pkinase 5.30E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0012 - - - 0.0