Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0027 ATGACACATTTCCTTTTCTTTGCCGCCCTTCTCTCTCTTTCACTTACCCCTTCCTTTTGCTTCCATCCCAAATCCTTCAATCTCTCTAACTACCACTCCTATGACTCTGATTGGTCTCCGGCCGTCGCCACCTGGTACGGTCCTCCTAATGGTGCCGGGAGCGATGGAGGTTCGTGTGGATATGGAGAGGCGGTGGAGCAACCACCATTTTCGTCGTTAGTTACGGCGGGAGGCCCTTCTTTGTACAAATCTGGCAAAGCCTGTGGAGCTTGCTATCAGGTGAAGTGCTCCGGAGAAGTCGCGTGCTCAGGGAATCCAGTGACGGTGGTTATAACCGATAGTTGTCCCGGTGGCTCCTGTGCTTCTGACTCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCGGGCTGATGAACTCCGCAGTCTCGGCGTTTTGCATATTCAACATAAAAGGGTGGAATGCAATTATCCGAGAACGTCAATCAGTTTCATCGTGGACTCGGGGTCGAACTCGAACTATTTCGCAGCTCTAATCGAATATGAAGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGTAGACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTTGACTCCGGCTCAGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACTGCCCTGGACTCCGGCAAGATCGTGGTCGCAAACAACGTAATTCCCGTCGGGTGGCAGCCAGGGATGACTTATAGATCAGCGGTCAACTTCGATACTTAA 804 52.36 MTHFLFFAALLSLSLTPSFCFHPKSFNLSNYHSYDSDWSPAVATWYGPPNGAGSDGGSCGYGEAVEQPPFSSLVTAGGPSLYKSGKACGACYQVKCSGEVACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKRVECNYPRTSISFIVDSGSNSNYFAALIEYEDGDGELGSVELKQVDSYSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKIVVANNVIPVGWQPGMTYRSAVNFDT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 555931 556930 - ClG42_05g0002700.10 Clacu05g0027 247774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0027 267 SMART dpbb_1 74 156 IPR007112 -
Clacu05g0027 267 Pfam Lytic transglycolase 75 140 IPR009009 -
Clacu05g0027 267 SUPERFAMILY Barwin-like endoglucanases 37 186 IPR036908 -
Clacu05g0027 267 Gene3D - 165 266 IPR036749 -
Clacu05g0027 267 Gene3D - 24 162 IPR036908 -
Clacu05g0027 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu05g0027 267 CDD DPBB_EXPB_N 38 161 - -
Clacu05g0027 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 166 IPR007112 -
Clacu05g0027 267 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Clacu05g0027 267 SUPERFAMILY PHL pollen allergen 167 261 IPR036749 -
Clacu05g0027 267 PANTHER EXPANSIN-B3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1790 Clacu-Chr2:31439954 Clacu05g0027 Clacu-Chr5:555931 8.70E-64 dispersed
Clacu05g0027 Clacu-Chr5:555931 Clacu07g0290 Clacu-Chr7:3228956 5.10E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0027 - - - 0.0