Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0035 ATGGAACCATTTTTCAATTATATTGAAGCATCTGATGCTAAAGCAACCACCTTTTGCAACTCTGCCTCTATCACAACCCATGAATACCAACAAGTTTCTAAGAACCGTAAACAGAGGAGCACTCAAGAAAACAGAGATCATCACCCTATGTTCAGAGGAGTTCGAAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACCAGAATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCATGACGCCGCCGCGCTGGCTATTAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAATTCCTACCTCGCCCGCTCTCCAGGTCCCACAAGGACATTCAGGCCGCCGCGGCACAGGCGGCAGCCGCCACATTTTCCGCTGGAAGTGACGCTGAAGGTGGTGGAGGAGAAGCGGCGGAAGAGAGCAGGGAGACTCTGTTTCCTGGAAGCGACGGGGGAGACAGAACAGAGGACTCTACAAACTCCCTGTCGACGGCAGCCGGTGATGAGACATTGTTCGATTTGCCAGATTTGTTCGTCGGAAGTTCTGATTTGAAAGACGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTCTGTGCTGCGGCCGATCATAATGGTTTTCGGCTAGAAGAGCCTTCATTCTGGGAACTAATTTAA 690 50.29 MEPFFNYIEASDAKATTFCNSASITTHEYQQVSKNRKQRSTQENRDHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGSDAEGGGGEAAEESRETLFPGSDGGDRTEDSTNSLSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSLWQFCAAADHNGFRLEEPSFWELI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 651495 652184 - ClG42_05g0003500.10 Clacu05g0035 247782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0035 229 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Clacu05g0035 229 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 MobiDBLite consensus disorder prediction 27 48 - -
Clacu05g0035 229 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 MobiDBLite consensus disorder prediction 138 176 - -
Clacu05g0035 229 Pfam AP2 domain 51 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Clacu05g0035 229 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g0035 229 MobiDBLite consensus disorder prediction 32 48 - -
Clacu05g0035 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 202 IPR051032 -
Clacu05g0035 229 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0035 Clacu-Chr5:651495 Clacu06g0246 Clacu-Chr6:2891275 1.60E-34 dispersed
Clacu05g0035 Clacu-Chr5:651495 Clacu09g0180 Clacu-Chr9:1744541 2.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47576 PF00847 AP2 4.30E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0035 - - - 0.0