Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0040 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCCAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGGGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTGTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA 876 52.85 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 692457 694492 + ClG42_05g0004000.10 Clacu05g0040 247787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0040 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 271 IPR050762 -
Clacu05g0040 291 MobiDBLite consensus disorder prediction 71 139 - -
Clacu05g0040 291 Gene3D - 131 199 - -
Clacu05g0040 291 SMART halz 194 237 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0040 291 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Clacu05g0040 291 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g0040 291 CDD homeodomain 138 195 IPR001356 GO:0003677(InterPro)
Clacu05g0040 291 MobiDBLite consensus disorder prediction 98 139 - -
Clacu05g0040 291 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677(InterPro)
Clacu05g0040 291 Pfam Homeodomain 138 192 IPR001356 GO:0003677(InterPro)
Clacu05g0040 291 MobiDBLite consensus disorder prediction 80 96 - -
Clacu05g0040 291 SUPERFAMILY Homeodomain-like 124 195 IPR009057 -
Clacu05g0040 291 SMART HOX_1 136 198 IPR001356 GO:0003677(InterPro)
Clacu05g0040 291 FunFam Homeobox-leucine zipper protein 18 123 199 - -
Clacu05g0040 291 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu05g0040 291 Coils Coil 200 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0040 Clacu-Chr5:692457 Clacu10g0244 Clacu-Chr10:2951263 2.00E-74 dispersed
Clacu05g0040 Clacu-Chr5:692457 Clacu10g1746 Clacu-Chr10:31003534 2.90E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47577 PF04618 HD-ZIP_N 3.80E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0040 K09338 - csv:101222132 450.284