Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0050 ATGAACGGCAAAACTCCGGCCACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATTAAGATTCTCGATCGTGAAAAAGTTCTTCGCCACAGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTGAAAGTGATCAAGCATCCGAATGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAGATAGCCGCAAAGGGAAGGCTAAAAGAGGATGAGGCAAGGAAATATTTCCAGCAACTTATAAATGCTGTAGATTACTGCCATAGTAGAGGCGTCTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTGCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACACCAAACTACGTAGCTCCTGAGGTCTTCAATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTTATTCTCTTTGTTCTTATGGCTGGCTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAATGCTGATTTTTCCTTTCCATCATGGTTCTCAAGTGGTGCAAGAAAACTAGTTTGCCGCATTCTTGATCCAGACCCTATTAATCGAATAACAATAGCCGAAATTCAAGAAGATCCATGGTTCAAGAAGGGCTACACCCCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTAGATGCCGCTTTTAGCAGCTCAAAGGAACATCTTGTGACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCGTTTTACTTCGCAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAGGAAACTGCAAAACCAATGGGGTTCAATGTACGAAAACGGGACTACAAGATGAAGTTGCAAGGTGACAAAACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTTGAGGTGGCTCCTTCATTGCATATGGTCGAGCTTCGGAAAACAGGGGGCGATACGCTTGAGTTTCATAAGGCATGTCATCAGTATTCTTAG 1272 43.63 MNGKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKVLRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFNDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMCLYRKISNADFSFPSWFSSGARKLVCRILDPDPINRITIAEIQEDPWFKKGYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKACHQYS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 755297 759991 - ClG42_05g0005000.10 Clacu05g0050 247797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0050 423 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu05g0050 423 CDD STKc_SnRK3 14 269 - -
Clacu05g0050 423 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Clacu05g0050 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0050 423 FunFam Non-specific serine/threonine protein kinase 306 423 - -
Clacu05g0050 423 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Clacu05g0050 423 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Clacu05g0050 423 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Clacu05g0050 423 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0050 423 Gene3D Kinase associated domain 1, KA1 306 423 - -
Clacu05g0050 423 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Clacu05g0050 423 CDD CIPK_C 313 419 - -
Clacu05g0050 423 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Clacu05g0050 423 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Clacu05g0050 423 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Clacu05g0050 423 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0050 423 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0658 Clacu-Chr3:7234287 Clacu05g0050 Clacu-Chr5:755297 1.20E-174 dispersed
Clacu05g0050 Clacu-Chr5:755297 Clacu06g1207 Clacu-Chr6:22734961 5.10E-135 dispersed
Clacu11g0201 Clacu-Chr11:1722123 Clacu05g0050 Clacu-Chr5:755297 1.00E-68 transposed
Clacu01g0016 Clacu-Chr1:205983 Clacu05g0050 Clacu-Chr5:755297 5.50E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73527 PF00069 Pkinase 1.10E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0050 - - - 0.0