Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0067 ATGTTCAATTATCCGTTGAAGCATATACCTAGAGAAGAAACTTCATATGGCCTTGAGATCAATCTCCTTCCTGCTTCATTCGTCGATCCCTCTTTTATTCACAATCCTGATTCGATTTTCATTTCCCTTTTCGTCTTTTTTCCCCATTCCGGATCCGAAGCAATTTCTCCAGGGGAATTTGTTTATGGTATGGAAACAGGGCCTGCCACTTCTAACCATTCATCGTCATTGCCCTTTGTTATGGAATGCCGATTTCGCTTGCAATCGGCATTCGATTCTTTTTGCATTGCGTCCGAAGCCTTTTCCGAGCATCGTCGTTGTCGAATTCCGATCTGGCGACATGCTTTTTCTAGCAAAAATGAGTGCCTAGCTGATCCCATTAGTGCGTTATTTGGAAGTATGGAGTCTCCTGATACTGCTGCTGAGAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAACTGGGCGCGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCCCCCATTATTCATAGAGATTTGAAAGGTGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAGATTGGAGATCTTGGACTAGCGATCGTTATGCAGCAGCCTACTGCTCAAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAATGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAGCCTGCTTCCCTTGCTAAGGTGAGTGATCCACAGACTATGGAGTTCATCAATAAATGTTTGGTTCCAGCGCATGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGATTCATTCCTTCAAGTTGAGAACCCAAAGGAATCAGCGCGCAATCCCCTACAGCTACCTATCCAGGTTCCTAAATCAATGAATTTGCCAAAGAGTGGACCTATCTCCATGGACATTGACATTGACCACAAACAACATTCTTTAAGCACTTATGCTGAAAGCAATAGTGGGAGTCCACACTTTCCAGTTGTGGAGTTCCAGACAATGAATAAGAACAACGAGTTCAGGTTACGTGGAAATAAGAATGATGAAAACTCCGTGGCATTAACCTTGCGTATCGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACATTTTATCTCGATTCTGATACTGCACTATCAGTAGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGGTTGGAAGCCCTTGTCTGTTAATTCCTCAAATGGAGAATCGAGTCTTTGCGGCGGTCCCCCCATCCTCAAAAGTGTGAAATCATCTCTTGGATCTCCATGGGGTTCAATGTCAACTGGGATTCATGATGGGTTGGTCGAGCAAGACATTTCCTCTGTGTTAGTGTGTAGTACTCAAAAGGATTGTCTGCAATCTGAGCGAGATGGCTGGGCTGACGATATTCCCAGTAGTCATATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGACTTGAATTCACACGCTTCATTTGCGTCAGAGTTACTGGTCGAAGATTGCTCTACCAAAAGTTCTAAGGTGTTTGATTGTTCCAATATTGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGGGGAACTAGAGCCCCACGGTTCATCATATGTTGAAGAAAAATTGCAAAGAAATGTTAGTGATGTTGGAATCATCACTCCCATGGATTATTTTGTGAAGAACTCGGTGGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGTTATCGTTTGCGGACAAGGATCTTGATGCTGAACTCAAGATGGAAATCAATGCTATCGAGACACATTATCGGCAACTGTTTGACGAGCTATCACGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 2388 41.88 MFNYPLKHIPREETSYGLEINLLPASFVDPSFIHNPDSIFISLFVFFPHSGSEAISPGEFVYGMETGPATSNHSSSLPFVMECRFRLQSAFDSFCIASEAFSEHRRCRIPIWRHAFSSKNECLADPISALFGSMESPDTAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECKNPAQIFRKVTSGIKPASLAKVSDPQTMEFINKCLVPAHERLSAKELLKDSFLQVENPKESARNPLQLPIQVPKSMNLPKSGPISMDIDIDHKQHSLSTYAESNSGSPHFPVVEFQTMNKNNEFRLRGNKNDENSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPGWKPLSVNSSNGESSLCGGPPILKSVKSSLGSPWGSMSTGIHDGLVEQDISSVLVCSTQKDCLQSERDGWADDIPSSHIFDTCPSSPSLANFEDLNSHASFASELLVEDCSTKSSKVFDCSNIDGSSKGSSWSIGELEPHGSSYVEEKLQRNVSDVGIITPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSFADKDLDAELKMEINAIETHYRQLFDELSRMREEALEATRKRWIAKKKLIH 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 875198 880165 - ClG42_05g0006700.10 Clacu05g0067 247814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0067 795 Gene3D - 488 559 - -
Clacu05g0067 795 Pfam Protein kinase domain 153 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0067 795 FunFam probable serine/threonine-protein kinase WNK9 233 412 - -
Clacu05g0067 795 Gene3D Phosphorylase Kinase; domain 1 133 231 - -
Clacu05g0067 795 Gene3D Transferase(Phosphotransferase) domain 1 233 412 - -
Clacu05g0067 795 CDD STKc_WNK 148 407 - -
Clacu05g0067 795 Coils Coil 758 785 - -
Clacu05g0067 795 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 136 781 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu05g0067 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g0067 795 SMART serkin_6 150 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0067 795 ProSiteProfiles Protein kinase domain profile. 150 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g0067 795 SUPERFAMILY Protein kinase-like (PK-like) 152 452 IPR011009 -
Clacu05g0067 795 FunFam Probable serine/threonine-protein kinase WNK1 135 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0156 Clacu-Chr1:1588393 Clacu05g0067 Clacu-Chr5:875198 9.80E-175 dispersed
Clacu05g0067 Clacu-Chr5:875198 Clacu06g0607 Clacu-Chr6:7007267 1.90E-127 dispersed
Clacu05g0067 Clacu-Chr5:875198 Clacu03g0309 Clacu-Chr3:3611049 7.10E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73528 PF00069 Pkinase 3.20E-53 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0067 K08867 - csv:101204101 1207.2