Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g0083 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGATTCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCGGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATACAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTCGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGACGTCGACATTGAGGTTGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGTATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGGTAG 1857 45.72 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETDSTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPVSRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVG 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 990212 992068 + ClG42_05g0008300.10 Clacu05g0083 247830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g0083 618 PANTHER MYC 41 607 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Clacu05g0083 618 SMART finulus 449 498 IPR011598 GO:0046983(InterPro)
Clacu05g0083 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 504 IPR036638 GO:0046983(InterPro)
Clacu05g0083 618 CDD bHLH_AtAIB_like 440 513 - -
Clacu05g0083 618 FunFam Transcription factor bHLH13 436 509 - -
Clacu05g0083 618 Gene3D - 436 507 IPR036638 GO:0046983(InterPro)
Clacu05g0083 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983(InterPro)
Clacu05g0083 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Clacu05g0083 618 MobiDBLite consensus disorder prediction 503 523 - -
Clacu05g0083 618 MobiDBLite consensus disorder prediction 409 454 - -
Clacu05g0083 618 MobiDBLite consensus disorder prediction 408 454 - -
Clacu05g0083 618 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1873 Clacu-Chr1:30872087 Clacu05g0083 Clacu-Chr5:990212 4.30E-13 dispersed
Clacu02g0770 Clacu-Chr2:8480081 Clacu05g0083 Clacu-Chr5:990212 4.90E-16 dispersed
Clacu05g0083 Clacu-Chr5:990212 Clacu10g0161 Clacu-Chr10:1951009 1.10E-61 dispersed
Clacu05g0083 Clacu-Chr5:990212 Clacu07g0071 Clacu-Chr7:1130871 2.30E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47580 PF14215 bHLH-MYC_N 6.30E-54 CL0161 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g0083 - - - 0.0